KWOH Chee Keong

Appointment: Associate Professor

Research topics:

• Machine Learning and Statistical Inference
• Learning with Unlabeled Data
• Meta and Ensemble learning
• Ontology for Knowledge Representation

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1 to 10 of 888 Results

Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution Apr 14, 2025 - AcRF Tier 2 Influenza Ivan, Fransiskus Xaverius; Deshpande, Akhila; Lim, Chun Wei; Kwoh, Chee Keong, 2019, "Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution", https://doi.org/10.21979/N9/PDYCUD, DR-NTU (Data), V2 Various computational and statistical approaches have been proposed to uncover the mutational patterns of rapidly evolving influenza viral genes. A problem that draws much attention is to identify pairs of sites that potentially co-mutate to contribute to the overall fitness of t...
codes.tar.gz Apr 14, 2025 - Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution Gzip Archive - 48.3 MB - MD5: bb209381404d10226a7e4ee0f284be41 Code Codes for executing the analysis pipeline.
Documentation - Codes (Tool) for Uncovering Mutational Patterns of Influenza Virus Evolution.pdf Apr 14, 2025 - Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution Adobe PDF - 653.3 KB - MD5: 2238b7ff53a88f26a9c388838525bba7 Documentation Documentation of the codes (tool), which describe the input and output of the codes, environment for running the codes, and the steps for running the codes or analysis pipeline.
indata.tar.gz Apr 14, 2025 - Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution Gzip Archive - 2.7 MB - MD5: 908471814acc1085328004725841c5fe Data Examples of metadata and sequence data (contain records obtained from the NCBI Influenza Virus Resource) for analysis pipeline.
Methods.pdf Apr 14, 2025 - Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution Adobe PDF - 1.0 MB - MD5: daabe8f3f6ec2c81ab4da386c92505e6 Documentation Description of methods for the analysis pipeline.
Host Pathogen Protein-Protein Interactions(Nanyang Technological University) Feb 3, 2025
Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction Feb 3, 2025 - Coronavirus Neutralizing Antibodies Rashid, Shamima; Wan, Zhang; Kwoh, Chee Keong; Lin, Zhuoyi; Ng, Shaun Yue Hao; Yin, Rui; Senthilnath, J., 2025, "Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction", https://doi.org/10.21979/N9/IZZKTZ, DR-NTU (Data), V1, UNF:6:XqxFQ/x98XTQs7+Ns8GGJw== [fileUNF] This dataset contains 3 versions of epitope-paratope data and their neutralizing data for the SARS-CoV 2 virus. We pre-processed and annotated antibody-antigen binding data from the Observed Antibody Space (OAS) database to obtain these paratopes and epitopes.
Citation Feb 3, 2025 - Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction Plain Text - 281 B - MD5: b6f4c46fb08d07a94449762ae037d9e1 Citation Information
CoV-AbDab_281221_Shaun.xlsx Feb 3, 2025 - Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction MS Excel Spreadsheet - 8.9 MB - MD5: 2713a4b215b8c6a8429e44dc0d6f6342 Raw Data
CoV-AbDab_310.tab Feb 3, 2025 - Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction Tabular Data - 23.8 KB - 6 Variables, 310 Observations - UNF:6:1S8xNlxC/A5bjyz5wcJXPQ== the data with PDB identifiers in columns

Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution

Apr 14, 2025 - AcRF Tier 2 Influenza

Ivan, Fransiskus Xaverius; Deshpande, Akhila; Lim, Chun Wei; Kwoh, Chee Keong, 2019, "Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution", https://doi.org/10.21979/N9/PDYCUD, DR-NTU (Data), V2

Various computational and statistical approaches have been proposed to uncover the mutational patterns of rapidly evolving influenza viral genes. A problem that draws much attention is to identify pairs of sites that potentially co-mutate to contribute to the overall fitness of t...

codes.tar.gz

Apr 14, 2025 - Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution

Gzip Archive - 48.3 MB -

Code

Codes for executing the analysis pipeline.

Documentation - Codes (Tool) for Uncovering Mutational Patterns of Influenza Virus Evolution.pdf

Apr 14, 2025 - Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution

Adobe PDF - 653.3 KB -

Documentation

Documentation of the codes (tool), which describe the input and output of the codes, environment for running the codes, and the steps for running the codes or analysis pipeline.

indata.tar.gz

Apr 14, 2025 - Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution

Gzip Archive - 2.7 MB -

Data

Examples of metadata and sequence data (contain records obtained from the NCBI Influenza Virus Resource) for analysis pipeline.

Methods.pdf

Apr 14, 2025 - Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution

Adobe PDF - 1.0 MB -

Documentation

Description of methods for the analysis pipeline.

Host Pathogen Protein-Protein Interactions(Nanyang Technological University)

Feb 3, 2025

Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction

Feb 3, 2025 - Coronavirus Neutralizing Antibodies

Rashid, Shamima; Wan, Zhang; Kwoh, Chee Keong; Lin, Zhuoyi; Ng, Shaun Yue Hao; Yin, Rui; Senthilnath, J., 2025, "Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction", https://doi.org/10.21979/N9/IZZKTZ, DR-NTU (Data), V1, UNF:6:XqxFQ/x98XTQs7+Ns8GGJw== [fileUNF]

This dataset contains 3 versions of epitope-paratope data and their neutralizing data for the SARS-CoV 2 virus. We pre-processed and annotated antibody-antigen binding data from the Observed Antibody Space (OAS) database to obtain these paratopes and epitopes.

Citation

Feb 3, 2025 - Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction

Plain Text - 281 B -

Citation Information

CoV-AbDab_281221_Shaun.xlsx

Feb 3, 2025 - Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction

MS Excel Spreadsheet - 8.9 MB -

Raw Data

CoV-AbDab_310.tab

Feb 3, 2025 - Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction

Tabular Data - 23.8 KB - 6 Variables, 310 Observations -

the data with PDB identifiers in columns

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