Zheng Jie

Appointment: Assistant Professor (Former)

Research topics:

• Computational Biology and Bioinformatics
• Genomics and Epigenomics Systems Biology
• Molecular Evolution, Comparative & Population Genomics
• Algorithm Design, Scientific Data Mining and Knowledge Discovery

Featured Dataverses

In order to use this feature you must have at least one published dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

1 to 8 of 8 Results

NetLand: quantitative modeling and visualization of Waddington’s epigenetic landscape using probabilistic potential Sep 19, 2017 - NetLand Zheng, Jie, 2017, "NetLand: quantitative modeling and visualization of Waddington’s epigenetic landscape using probabilistic potential", https://doi.org/10.21979/N9/IP6DBD, DR-NTU (Data), V1 About NetLand NetLand is a software for quantitative modeling and visualization of Waddington’s epigenetic landscape. NetLand is intended for modeling, simulation and visualization of gene regulatory networks (GRNs) and their corresponding quasi-potential landscapes. Users can im...
SynLethDB: synthetic lethality database towards discovery of selective and sensitive anticancer drug targets Sep 19, 2017 - SynLethDB Zheng, Jie, 2017, "SynLethDB: synthetic lethality database towards discovery of selective and sensitive anticancer drug targets", https://doi.org/10.21979/N9/CVEVDZ, DR-NTU (Data), V1 This dataset is used in the SynLethDB which is the first comprehensive database that harbours a large set of synthetic lethality (SL) gene pairs collected from a variety of sources including biochemical assays, other related databases, computational predictions and text mining. I...
Sig2GRN: a software tool linking signaling pathway with gene regulatory network for dynamic simulation Sep 19, 2017 - Sig2GRN Zheng, Jie, 2017, "Sig2GRN: a software tool linking signaling pathway with gene regulatory network for dynamic simulation", https://doi.org/10.21979/N9/SO9VRB, DR-NTU (Data), V1 Sig2GRN is a software tool which links the models of signaling pathway with gene regulatory networks (GRNs). A generalized logical model, Sign2GRN is used in modeling the upstream signaling pathways. Then a Boolean model and a thermodynamics-based model are employed to predict th...
Knowledge-guided fuzzy logic modeling to infer cellular signaling networks from proteomic data Sep 19, 2017 - Knowledge-Guided Fuzzy Logic Network Modeling Zheng, Jie, 2017, "Knowledge-guided fuzzy logic modeling to infer cellular signaling networks from proteomic data", https://doi.org/10.21979/N9/VLZWCL, DR-NTU (Data), V1 About Knowledge-guided fuzzy logic network model Knowledge-guided fuzzy logic network model is a new hybrid method to integrate the prior knowledge and data-driven learning for signaling pathway inference. It is applied to infer signaling pathways by exploiting both prior knowled...
Knowledge-Guided Fuzzy Logic Network Modeling(Nanyang Technological University) Sep 19, 2017 This dataverse contains source code and dataset for Knowledge-Guided Fuzzy Logic Network Modeling.
Sig2GRN(Nanyang Technological University) Sep 19, 2017 This dataverse contains Sig2GRN package for Cytoscape Plugin.
SynLethDB(Nanyang Technological University) Sep 19, 2017 This dataverse contains datasets that are used in the SynLethDB (Synthetic Lethality Database).
NetLand(Nanyang Technological University) Sep 19, 2017 This dataverse contains dataset for NetLand software.

NetLand: quantitative modeling and visualization of Waddington’s epigenetic landscape using probabilistic potential

Sep 19, 2017 - NetLand

Zheng, Jie, 2017, "NetLand: quantitative modeling and visualization of Waddington’s epigenetic landscape using probabilistic potential", https://doi.org/10.21979/N9/IP6DBD, DR-NTU (Data), V1

About NetLand NetLand is a software for quantitative modeling and visualization of Waddington’s epigenetic landscape. NetLand is intended for modeling, simulation and visualization of gene regulatory networks (GRNs) and their corresponding quasi-potential landscapes. Users can im...

SynLethDB: synthetic lethality database towards discovery of selective and sensitive anticancer drug targets

Sep 19, 2017 - SynLethDB

Zheng, Jie, 2017, "SynLethDB: synthetic lethality database towards discovery of selective and sensitive anticancer drug targets", https://doi.org/10.21979/N9/CVEVDZ, DR-NTU (Data), V1

This dataset is used in the SynLethDB which is the first comprehensive database that harbours a large set of synthetic lethality (SL) gene pairs collected from a variety of sources including biochemical assays, other related databases, computational predictions and text mining. I...

Sig2GRN: a software tool linking signaling pathway with gene regulatory network for dynamic simulation

Sep 19, 2017 - Sig2GRN

Zheng, Jie, 2017, "Sig2GRN: a software tool linking signaling pathway with gene regulatory network for dynamic simulation", https://doi.org/10.21979/N9/SO9VRB, DR-NTU (Data), V1

Sig2GRN is a software tool which links the models of signaling pathway with gene regulatory networks (GRNs). A generalized logical model, Sign2GRN is used in modeling the upstream signaling pathways. Then a Boolean model and a thermodynamics-based model are employed to predict th...

Knowledge-guided fuzzy logic modeling to infer cellular signaling networks from proteomic data

Sep 19, 2017 - Knowledge-Guided Fuzzy Logic Network Modeling

Zheng, Jie, 2017, "Knowledge-guided fuzzy logic modeling to infer cellular signaling networks from proteomic data", https://doi.org/10.21979/N9/VLZWCL, DR-NTU (Data), V1

About Knowledge-guided fuzzy logic network model Knowledge-guided fuzzy logic network model is a new hybrid method to integrate the prior knowledge and data-driven learning for signaling pathway inference. It is applied to infer signaling pathways by exploiting both prior knowled...

Knowledge-Guided Fuzzy Logic Network Modeling(Nanyang Technological University)

Sep 19, 2017

This dataverse contains source code and dataset for Knowledge-Guided Fuzzy Logic Network Modeling.

Sig2GRN(Nanyang Technological University)

Sep 19, 2017

This dataverse contains Sig2GRN package for Cytoscape Plugin.

SynLethDB(Nanyang Technological University)

Sep 19, 2017

This dataverse contains datasets that are used in the SynLethDB (Synthetic Lethality Database).

NetLand(Nanyang Technological University)

Sep 19, 2017

This dataverse contains dataset for NetLand software.

Add Data

Share Dataverse

Link Dataverse

Reset Modifications