AcRF Tier 2 Influenza

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21 to 30 of 40 Results

VI2VI-virus.tab Apr 15, 2019 - Virulence Information for Influenza Virus Infection (VI2VI) in Mice Tabular Data - 9.9 KB - 9 Variables, 112 Observations - UNF:6:gqvKgcptk1lEZuvF5Db8ng== Data Cleaned VI2VI dataset that provide virulence information of influenza viruses (mouse strains were ignored and most virulent information was considered for virulence label).
Code and data for CFreeEnS Apr 3, 2019 Zhou, Xinrui, 2019, "Code and data for CFreeEnS", https://doi.org/10.21979/N9/4YDZED, DR-NTU (Data), V1 A method called Context-Free Encoding Scheme (CFreeEnS) was proposed to encode protein sequence pairs into a numeric matrix. CFreeEnS takes advantage of rich information about the physiochemical and structural properties of amino acids. This encoding scheme keeps information abou...
code-data.zip Apr 3, 2019 - Code and data for CFreeEnS ZIP Archive - 80.3 MB - MD5: c31ae8f272b49954def356f35979cd43 code for CFreeEnS and datasets for testing.
Additional files for: Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses. Mar 22, 2019 Zhou, Xinrui; Zheng, Jie; Ivan, Fransiskus Xaverius; Yin, Rui; Shoba Ranganathan; Chow, Vincent T. K.; Kwoh, Chee-Keong, 2019, "Additional files for: Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses.", https://doi.org/10.21979/N9/TQEOP6, DR-NTU (Data), V1 BACKGROUND: Influenza viruses are undergoing continuous and rapid evolution. The fatal influenza A/H7N9 has drawn attention since the first wave of infections in March 2013 and raised more grave concerns with its increased potential to spread among humans. Experimental studies ha...
Additional file 1.pdf Mar 22, 2019 - Additional files for: Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses. Adobe PDF - 117.4 KB - MD5: 7dde51d3fa705019bbf92e5017f057bd Phylogenetic trees of influenza A/H7N9. Time scale phylogenetic trees of PB2, PB1, PA, HA, NP, NA, M1 and NS1 genes of influenza H7N9 strain.
Additional file 2.pdf Mar 22, 2019 - Additional files for: Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses. Adobe PDF - 466.8 KB - MD5: b008295a026bd26d374895e3beef8c4a Superimpose the best and worst docked HA-ligand complexes. Visualize the structure of docked SH13-LSTa, SH13-LSTc, TW17-LSTa and TW17-LSTc complexes with the highest and the lowest binding affinities.
Additional file 3.pdf Mar 22, 2019 - Additional files for: Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses. Adobe PDF - 702.3 KB - MD5: 4479f3368ea15c9a21c9aab5bb4b8e93 VdW energy, electrostatic energy and total interaction energy of SH13-LSTa, SH13-LSTc, TW17-LSTa and TW17-LSTc during the whole simulation (50 ns).
Additional file 4.pdf Mar 22, 2019 - Additional files for: Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses. Adobe PDF - 424.2 KB - MD5: 406071fc726dd2e39ef9d9e18464e718 Two rounds of 50 ns molecular dynamics simulation for SH13-LSTa, SH13-LSTc, TW17-LSTa, TW17-LSTc
Additional file 5.pdf Mar 22, 2019 - Additional files for: Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses. Adobe PDF - 153.1 KB - MD5: 5bffd0fe476660469a28b80d928ffaf6 Residue contributions during the whole simulation process.
Additional file 6.pdf Mar 22, 2019 - Additional files for: Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses. Adobe PDF - 24.5 KB - MD5: 7f03fe7c34e33a584ff0c79e34419e95 Average energy contribution of residues that involved in receptorligand interactions in the optimally docked complexes

VI2VI-virus.tab

Apr 15, 2019 - Virulence Information for Influenza Virus Infection (VI2VI) in Mice

Tabular Data - 9.9 KB - 9 Variables, 112 Observations -

Data

Cleaned VI2VI dataset that provide virulence information of influenza viruses (mouse strains were ignored and most virulent information was considered for virulence label).

Code and data for CFreeEnS

Apr 3, 2019

Zhou, Xinrui, 2019, "Code and data for CFreeEnS", https://doi.org/10.21979/N9/4YDZED, DR-NTU (Data), V1

A method called Context-Free Encoding Scheme (CFreeEnS) was proposed to encode protein sequence pairs into a numeric matrix. CFreeEnS takes advantage of rich information about the physiochemical and structural properties of amino acids. This encoding scheme keeps information abou...

code-data.zip

Apr 3, 2019 - Code and data for CFreeEnS

ZIP Archive - 80.3 MB -

code for CFreeEnS and datasets for testing.

Additional files for: Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses.

Mar 22, 2019

Zhou, Xinrui; Zheng, Jie; Ivan, Fransiskus Xaverius; Yin, Rui; Shoba Ranganathan; Chow, Vincent T. K.; Kwoh, Chee-Keong, 2019, "Additional files for: Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses.", https://doi.org/10.21979/N9/TQEOP6, DR-NTU (Data), V1

BACKGROUND: Influenza viruses are undergoing continuous and rapid evolution. The fatal influenza A/H7N9 has drawn attention since the first wave of infections in March 2013 and raised more grave concerns with its increased potential to spread among humans. Experimental studies ha...

Additional file 1.pdf

Mar 22, 2019 - Additional files for: Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses.

Adobe PDF - 117.4 KB -

Phylogenetic trees of influenza A/H7N9. Time scale phylogenetic trees of PB2, PB1, PA, HA, NP, NA, M1 and NS1 genes of influenza H7N9 strain.

Additional file 2.pdf

Mar 22, 2019 - Additional files for: Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses.

Adobe PDF - 466.8 KB -

Superimpose the best and worst docked HA-ligand complexes. Visualize the structure of docked SH13-LSTa, SH13-LSTc, TW17-LSTa and TW17-LSTc complexes with the highest and the lowest binding affinities.

Additional file 3.pdf

Mar 22, 2019 - Additional files for: Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses.

Adobe PDF - 702.3 KB -

VdW energy, electrostatic energy and total interaction energy of SH13-LSTa, SH13-LSTc, TW17-LSTa and TW17-LSTc during the whole simulation (50 ns).

Additional file 4.pdf

Mar 22, 2019 - Additional files for: Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses.

Adobe PDF - 424.2 KB -

Two rounds of 50 ns molecular dynamics simulation for SH13-LSTa, SH13-LSTc, TW17-LSTa, TW17-LSTc

Additional file 5.pdf

Mar 22, 2019 - Additional files for: Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses.

Adobe PDF - 153.1 KB -

Residue contributions during the whole simulation process.