AcRF Tier 2 Influenza

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1 to 10 of 40 Results

Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution Apr 14, 2025 Ivan, Fransiskus Xaverius; Deshpande, Akhila; Lim, Chun Wei; Kwoh, Chee Keong, 2019, "Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution", https://doi.org/10.21979/N9/PDYCUD, DR-NTU (Data), V2 Various computational and statistical approaches have been proposed to uncover the mutational patterns of rapidly evolving influenza viral genes. A problem that draws much attention is to identify pairs of sites that potentially co-mutate to contribute to the overall fitness of t...
codes.tar.gz Apr 14, 2025 - Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution Gzip Archive - 48.3 MB - MD5: bb209381404d10226a7e4ee0f284be41 Code Codes for executing the analysis pipeline.
Documentation - Codes (Tool) for Uncovering Mutational Patterns of Influenza Virus Evolution.pdf Apr 14, 2025 - Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution Adobe PDF - 653.3 KB - MD5: 2238b7ff53a88f26a9c388838525bba7 Documentation Documentation of the codes (tool), which describe the input and output of the codes, environment for running the codes, and the steps for running the codes or analysis pipeline.
indata.tar.gz Apr 14, 2025 - Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution Gzip Archive - 2.7 MB - MD5: 908471814acc1085328004725841c5fe Data Examples of metadata and sequence data (contain records obtained from the NCBI Influenza Virus Resource) for analysis pipeline.
Methods.pdf Apr 14, 2025 - Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution Adobe PDF - 1.0 MB - MD5: daabe8f3f6ec2c81ab4da386c92505e6 Documentation Description of methods for the analysis pipeline.
Virulence Information for Influenza Virus Infection (VI2VI) in Mice Aug 19, 2019 Ivan, Fransiskus Xaverius, 2019, "Virulence Information for Influenza Virus Infection (VI2VI) in Mice", https://doi.org/10.21979/N9/ILQBAB, DR-NTU (Data), V2, UNF:6:tcVfZQlYB60+SEUz7/g4jQ== [fileUNF] Datasets for Virulence Information for Influenza Virus Infection (VI2VI) in Mice. Please see VI2VI-creation.docx for further details. The analyses of the datasets was first provided as a bioRxiv preprint (see Related Publication) and it has now been accepted for BMC Supplements d...
analysis-scripts.7z Aug 19, 2019 - Virulence Information for Influenza Virus Infection (VI2VI) in Mice 7Z Archive - 17.1 KB - MD5: 62ad8dec6da617bc7dc2992fcc573075 Code Analysis scripts (for rule-based and random forest models, visualization, and some statistics). A small sample test data will be provided on request.
extrapolated-incomplete-genomes.tab Aug 19, 2019 - Virulence Information for Influenza Virus Infection (VI2VI) in Mice Tabular Data - 10.2 KB - 11 Variables, 84 Observations - UNF:6:LJ5Ya18vtvU92erY3iyLfA== Data List of incomplete influenza virus genomes that were extrapolated.
extrapolated-partial-sequences.tab Aug 19, 2019 - Virulence Information for Influenza Virus Infection (VI2VI) in Mice Tabular Data - 17.6 KB - 11 Variables, 145 Observations - UNF:6:NFU6GUKKhdlCJXRr6BXzDQ== Data List of partial influenza virus sequences that were extrapolated.
genomes-metadata.tab Aug 19, 2019 - Virulence Information for Influenza Virus Infection (VI2VI) in Mice Tabular Data - 180.0 KB - 9 Variables, 2087 Observations - UNF:6:bSUeeZ/3TTCwfuWQ4zMqyg== Data Metadata of influenza sequences being collected, GISAID acknowledgement table and mutant/recombinant viruses being generated.

Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution

Apr 14, 2025

Ivan, Fransiskus Xaverius; Deshpande, Akhila; Lim, Chun Wei; Kwoh, Chee Keong, 2019, "Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution", https://doi.org/10.21979/N9/PDYCUD, DR-NTU (Data), V2

Various computational and statistical approaches have been proposed to uncover the mutational patterns of rapidly evolving influenza viral genes. A problem that draws much attention is to identify pairs of sites that potentially co-mutate to contribute to the overall fitness of t...

codes.tar.gz

Apr 14, 2025 - Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution

Gzip Archive - 48.3 MB -

Code

Codes for executing the analysis pipeline.

Documentation - Codes (Tool) for Uncovering Mutational Patterns of Influenza Virus Evolution.pdf

Apr 14, 2025 - Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution

Adobe PDF - 653.3 KB -

Documentation

Documentation of the codes (tool), which describe the input and output of the codes, environment for running the codes, and the steps for running the codes or analysis pipeline.

indata.tar.gz

Apr 14, 2025 - Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution

Gzip Archive - 2.7 MB -

Data

Examples of metadata and sequence data (contain records obtained from the NCBI Influenza Virus Resource) for analysis pipeline.

Methods.pdf

Apr 14, 2025 - Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution

Adobe PDF - 1.0 MB -

Documentation

Description of methods for the analysis pipeline.

Virulence Information for Influenza Virus Infection (VI2VI) in Mice

Aug 19, 2019

Ivan, Fransiskus Xaverius, 2019, "Virulence Information for Influenza Virus Infection (VI2VI) in Mice", https://doi.org/10.21979/N9/ILQBAB, DR-NTU (Data), V2, UNF:6:tcVfZQlYB60+SEUz7/g4jQ== [fileUNF]

Datasets for Virulence Information for Influenza Virus Infection (VI2VI) in Mice. Please see VI2VI-creation.docx for further details. The analyses of the datasets was first provided as a bioRxiv preprint (see Related Publication) and it has now been accepted for BMC Supplements d...

analysis-scripts.7z

Aug 19, 2019 - Virulence Information for Influenza Virus Infection (VI2VI) in Mice

7Z Archive - 17.1 KB -

Code

Analysis scripts (for rule-based and random forest models, visualization, and some statistics). A small sample test data will be provided on request.

extrapolated-incomplete-genomes.tab

Aug 19, 2019 - Virulence Information for Influenza Virus Infection (VI2VI) in Mice

Tabular Data - 10.2 KB - 11 Variables, 84 Observations -

Data

List of incomplete influenza virus genomes that were extrapolated.

extrapolated-partial-sequences.tab

Aug 19, 2019 - Virulence Information for Influenza Virus Infection (VI2VI) in Mice

Tabular Data - 17.6 KB - 11 Variables, 145 Observations -

Data

List of partial influenza virus sequences that were extrapolated.

genomes-metadata.tab

Aug 19, 2019 - Virulence Information for Influenza Virus Infection (VI2VI) in Mice

Tabular Data - 180.0 KB - 9 Variables, 2087 Observations -

Data

Metadata of influenza sequences being collected, GISAID acknowledgement table and mutant/recombinant viruses being generated.

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