Appointment: Associate Professor

Research topics:

• Machine Learning and Statistical Inference
• Learning with Unlabeled Data
• Meta and Ensemble learning
• Ontology for Knowledge Representation

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codes.tar.gz
Apr 14, 2025 - Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution
Gzip Archive - 48.3 MB - MD5: bb209381404d10226a7e4ee0f284be41
Code
Codes for executing the analysis pipeline.
Documentation - Codes (Tool) for Uncovering Mutational Patterns of Influenza Virus Evolution.pdf
Documentation - Codes (Tool) for Uncovering Mutational Patterns of Influenza Virus Evolution.pdf
Apr 14, 2025 - Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution
Adobe PDF - 653.3 KB - MD5: 2238b7ff53a88f26a9c388838525bba7
Documentation
Documentation of the codes (tool), which describe the input and output of the codes, environment for running the codes, and the steps for running the codes or analysis pipeline.
indata.tar.gz
Apr 14, 2025 - Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution
Gzip Archive - 2.7 MB - MD5: 908471814acc1085328004725841c5fe
Data
Examples of metadata and sequence data (contain records obtained from the NCBI Influenza Virus Resource) for analysis pipeline.
Methods.pdf
Apr 14, 2025 - Phylogenetic Tree-based Pipeline for Uncovering Mutational Patterns during Influenza Virus Evolution
Adobe PDF - 1.0 MB - MD5: daabe8f3f6ec2c81ab4da386c92505e6
Documentation
Description of methods for the analysis pipeline.
Citation
Feb 3, 2025 - Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction
Plain Text - 281 B - MD5: b6f4c46fb08d07a94449762ae037d9e1
Citation Information
CoV-AbDab_281221_Shaun.xlsx
Feb 3, 2025 - Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction
MS Excel Spreadsheet - 8.9 MB - MD5: 2713a4b215b8c6a8429e44dc0d6f6342
Raw Data
CoV-AbDab_310.tab
Feb 3, 2025 - Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction
Tabular Data - 23.8 KB - 6 Variables, 310 Observations - UNF:6:1S8xNlxC/A5bjyz5wcJXPQ==
the data with PDB identifiers in columns
CoV-AbDab_extract.tab
Feb 3, 2025 - Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction
Tabular Data - 21.3 KB - 5 Variables, 310 Observations - UNF:6:GtERqAvwJ8cPApagJMT+dg==
Pre-processed data
data_preprocessing.py
Feb 3, 2025 - Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction
Python Source Code - 762 B - MD5: 892894b6ebf417b6fd4945ec00db732d
GCN_EpiPred_FinalNov2023.ipynb
Feb 3, 2025 - Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction
Jupyter Notebook - 222.3 KB - MD5: ed2bb96a02e866f3a3210f35e8e16cfa
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