Singapore Centre for Environmental Life Sciences Engineering (SCELSE)

This dataverse is a collection of the Singapore Centre for Environmental Life Sciences Engineering (SCELSE) research data.

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451 to 460 of 1,622 Results

raw_error_rates_select.sh Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Shell Script - 6.9 KB - MD5: 47a6226f3c9329b4a415407e3d3df3c2 script used to asses error rates of Nanopore consensus
sequence_select.pl Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Unknown - 4.8 KB - MD5: 8d825406eda9fef0666bd4887e90a1c8 script used with wrapper script 1
sequence_select_size.pl Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Unknown - 3.2 KB - MD5: f6fb0a9f4e54a28c48bcaf8f453698ab script used in wrapper_script_1 to filter Nanopore reads of desired length
sequence_unselect.pl Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Unknown - 4.7 KB - MD5: e283dbb2bfc48860f02fa8bd5cdc1dd2 script used with wrapper script 2
serialscript-1.sh Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Shell Script - 1.1 KB - MD5: 1fa6c23ba6177f06411e94c193cadfce Script used to assign job for wrapper_script_1 on server
SILVA_138.1_LSURef_tax_eukaryota_DNA.fasta Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Unknown - 87.9 MB - MD5: ecac3ec84dcd83f64e2e4750ec92b6e1 28S rDNA references used for taxonomic assignment
wrapper_script_1_basecall_demultiplex_barcodes_gpu_cpu.sh Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Shell Script - 9.0 KB - MD5: 12914d39b6ebdd4c94cd2a549c3d9538 Nanopore sequenced reads are first processed with wrapper_script_1
wrapper_script_2_cluster_barcodes_raw_minimap2_racon_cpu.sh Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Shell Script - 42.5 KB - MD5: 3727e7ba4787992918d90fe78fa6c954 Each barcode/sample folder is then processed with wrapper_script_2
Replication Data for: Functional metagenomic analysis of quorum sensing signaling in a nitrifying community Mar 24, 2022 - Yeo Yee Phan Tan, Chuan Hao; Yeo, Yee Phan; Ismail, Muhammad Hafiz; Ng, Kai Jing Noele; Sujatha, Subramoni; Taj, Shireen; Tay, Qi Xiang Martin; Xie, Chao; Staffan, Kjelleberg; Rice, Scott, 2022, "Replication Data for: Functional metagenomic analysis of quorum sensing signaling in a nitrifying community", https://doi.org/10.21979/N9/6OLO7I, DR-NTU (Data), V1, UNF:6:3Ni8K1ao2snKV1cVJ9SfWA== [fileUNF] Raw data for the manuscript "Functional metagenomic analysis of quorum sensing signaling in a nitrifying community"
20150423 12 synthases JB525.pzf Mar 24, 2022 - Replication Data for: Functional metagenomic analysis of quorum sensing signaling in a nitrifying community Unknown - 516.6 KB - MD5: 22e1effa3d414fbf270f0c08594e09d1

raw_error_rates_select.sh

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Shell Script - 6.9 KB -

script used to asses error rates of Nanopore consensus

sequence_select.pl

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Unknown - 4.8 KB -

script used with wrapper script 1

sequence_select_size.pl

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Unknown - 3.2 KB -

script used in wrapper_script_1 to filter Nanopore reads of desired length

sequence_unselect.pl

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Unknown - 4.7 KB -

script used with wrapper script 2

serialscript-1.sh

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Shell Script - 1.1 KB -

Script used to assign job for wrapper_script_1 on server

SILVA_138.1_LSURef_tax_eukaryota_DNA.fasta

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Unknown - 87.9 MB -

28S rDNA references used for taxonomic assignment

wrapper_script_1_basecall_demultiplex_barcodes_gpu_cpu.sh

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Shell Script - 9.0 KB -

Nanopore sequenced reads are first processed with wrapper_script_1

wrapper_script_2_cluster_barcodes_raw_minimap2_racon_cpu.sh

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Shell Script - 42.5 KB -

Each barcode/sample folder is then processed with wrapper_script_2

Replication Data for: Functional metagenomic analysis of quorum sensing signaling in a nitrifying community

Mar 24, 2022 - Yeo Yee Phan

Tan, Chuan Hao; Yeo, Yee Phan; Ismail, Muhammad Hafiz; Ng, Kai Jing Noele; Sujatha, Subramoni; Taj, Shireen; Tay, Qi Xiang Martin; Xie, Chao; Staffan, Kjelleberg; Rice, Scott, 2022, "Replication Data for: Functional metagenomic analysis of quorum sensing signaling in a nitrifying community", https://doi.org/10.21979/N9/6OLO7I, DR-NTU (Data), V1, UNF:6:3Ni8K1ao2snKV1cVJ9SfWA== [fileUNF]

Raw data for the manuscript "Functional metagenomic analysis of quorum sensing signaling in a nitrifying community"

20150423 12 synthases JB525.pzf

Mar 24, 2022 - Replication Data for: Functional metagenomic analysis of quorum sensing signaling in a nitrifying community

Unknown - 516.6 KB -

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