Singapore Centre for Environmental Life Sciences Engineering (SCELSE)

This dataverse is a collection of the Singapore Centre for Environmental Life Sciences Engineering (SCELSE) research data.

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441 to 450 of 1,622 Results

infer_ML_nucleotide_T92_G.mao Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Unknown - 2.7 KB - MD5: b4d72b1b8122a4c57a06324497dc90d3 analyses file of selected model used for phylogenetic tree construction of Nanopore consensus sequences
infer_ML_nucleotide_TN93_G.mao Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Unknown - 2.7 KB - MD5: bde45c78e999fb76011f04fb29d5045c analyses file of selected model used for phylogenetic tree construction of Nanopore consensus sequences
ITSx Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Plain Text - 146.9 KB - MD5: 1ceb71b2b3f150b2a0ba68832f8ac27b software to download from https://microbiology.se/software/itsx/
model_sel_ml_nucleotide.mao Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Unknown - 1.8 KB - MD5: b2a11860c5256cd4735eaf15942118db analyses file used to assess aligned Nanopore consensus sequences to identify model for phylogenetic tree construction
muscle_align_nucleotide.mao Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Unknown - 1.5 KB - MD5: 8039b4b563063b4a1266f4cc7985feae analyses file used to align Nanopore consensus sequences prior to phylogenetic tree construction
outgroup_full.fasta Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Unknown - 17.3 KB - MD5: 497f9c93407d0d008e217ae4bf832c82 full-length rDNA reference sequences of outgroup species used to align reads of individual microalgal species and tree generation
outgroup_pr2.fasta Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Unknown - 5.7 KB - MD5: 8cc0ac56a7f8e1977bd1c203a9049d4e 18S rDNA reference sequences of outgroup species from PR2 databsase used to align reads of individual microalgal species and tree generation
phylogenetic_analyses.sh Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Shell Script - 2.3 KB - MD5: da5e3ed8c9f78a040edfae376547e893 Script used to construct phylogenetic trees
phylo_ref_all.fasta Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Unknown - 186.3 KB - MD5: 7b48536bc8725c21f87b105c8388208c full-length rDNA reference sequences used to align reads of individual microalgal species and tree generatione
pr2_version_4.13.0_18S_taxo_long.fasta Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Unknown - 273.1 MB - MD5: 53da1e7625df156fc88e35493491c269 18S references used for taxonomic assignment

infer_ML_nucleotide_T92_G.mao

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Unknown - 2.7 KB -

analyses file of selected model used for phylogenetic tree construction of Nanopore consensus sequences

infer_ML_nucleotide_TN93_G.mao

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Unknown - 2.7 KB -

analyses file of selected model used for phylogenetic tree construction of Nanopore consensus sequences

ITSx

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Plain Text - 146.9 KB -

software to download from https://microbiology.se/software/itsx/

model_sel_ml_nucleotide.mao

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Unknown - 1.8 KB -

analyses file used to assess aligned Nanopore consensus sequences to identify model for phylogenetic tree construction

muscle_align_nucleotide.mao

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Unknown - 1.5 KB -

analyses file used to align Nanopore consensus sequences prior to phylogenetic tree construction

outgroup_full.fasta

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Unknown - 17.3 KB -

full-length rDNA reference sequences of outgroup species used to align reads of individual microalgal species and tree generation

outgroup_pr2.fasta

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Unknown - 5.7 KB -

18S rDNA reference sequences of outgroup species from PR2 databsase used to align reads of individual microalgal species and tree generation

phylogenetic_analyses.sh

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Shell Script - 2.3 KB -

Script used to construct phylogenetic trees

phylo_ref_all.fasta

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Unknown - 186.3 KB -

full-length rDNA reference sequences used to align reads of individual microalgal species and tree generatione

pr2_version_4.13.0_18S_taxo_long.fasta

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Unknown - 273.1 MB -

18S references used for taxonomic assignment

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