Singapore Centre for Environmental Life Sciences Engineering (SCELSE)

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431 to 440 of 1,622 Results

Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Aug 18, 2022 - Christaline George Christaline George, 2023, "Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)", https://doi.org/10.21979/N9/YXCFVA, DR-NTU (Data), V1 All scripts (wrapper scripts 1 & 2) along with its dependencies (perl and bash scripts) used to analyze sequencing data and generate Nanopore consensus sequences for deposition to LASeR database. Wrapper scripts 1 & 2 are used for data analyses for all chapters described in the t...
add_labels_counter_fasta_header.pl Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Unknown - 1.8 KB - MD5: 57c7874f41c4b1cbfc327d2afd2c277b script used in wrapper_script_1 to add identifiers to selected Nanopore reads
add_sequence_length_to_header.pl Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Unknown - 1.6 KB - MD5: 994a9dbc737ceca155b4f90f7995b727 script used in wrapper_script_1 to add sequence length to Nanopore reads
distance_estimation_pairwise_nucleotide.mao Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Unknown - 2.2 KB - MD5: ee682182c6f9d6e16689f57ea89d92f4
feat_retrieval_cmdline.pl Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Unknown - 4.5 KB - MD5: 22fff310ba65b1c97cdfd19559bd8c28 script used within wrapper_script_2 to retrieve features of blast analyses
find_model.sh Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Shell Script - 4.7 KB - MD5: b7078781342d97e53931b6c394f80eed analyses file used to identify model for phylogenetic tree construction of aligned Nanopore consensus sequences
full_rDNA_ref.fasta Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Unknown - 1.5 MB - MD5: b3c976fc4864095fdcb11ff09a663f2c full-length rDNA references used for taxonomic assignment
infer_ML_nucleotide_GTR_G.mao Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Unknown - 2.7 KB - MD5: 108ba999e16c7772b0d64f159ecb2d8c analyses file of selected model used for phylogenetic tree construction of Nanopore consensus sequences
infer_ML_nucleotide_K2_G_I.mao Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Unknown - 2.7 KB - MD5: 3ed9d5fb65b823ba198392122819b09d analyses file of selected model used for phylogenetic tree construction of Nanopore consensus sequences
infer_ML_nucleotide_K2_G.mao Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1) Unknown - 2.7 KB - MD5: 2d1a0e1a441feb60d8dc333835a776be analyses file of selected model used for phylogenetic tree construction of Nanopore consensus sequences

Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Aug 18, 2022 - Christaline George

Christaline George, 2023, "Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)", https://doi.org/10.21979/N9/YXCFVA, DR-NTU (Data), V1

All scripts (wrapper scripts 1 & 2) along with its dependencies (perl and bash scripts) used to analyze sequencing data and generate Nanopore consensus sequences for deposition to LASeR database. Wrapper scripts 1 & 2 are used for data analyses for all chapters described in the t...

add_labels_counter_fasta_header.pl

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Unknown - 1.8 KB -

script used in wrapper_script_1 to add identifiers to selected Nanopore reads

add_sequence_length_to_header.pl

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Unknown - 1.6 KB -

script used in wrapper_script_1 to add sequence length to Nanopore reads

distance_estimation_pairwise_nucleotide.mao

Aug 18, 2022 - Related Data for: Rapid and precise characterization of eukaryotic marine microalgae in the coastal waters of Singapore with third generation sequencing (Part 1)

Unknown - 2.2 KB -

feat_retrieval_cmdline.pl