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Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction
Feb 3, 2025
Rashid, Shamima; Wan, Zhang; Kwoh, Chee Keong; Lin, Zhuoyi; Ng, Shaun Yue Hao; Yin, Rui; Senthilnath, J., 2025, "Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction", https://doi.org/10.21979/N9/IZZKTZ, DR-NTU (Data), V1, UNF:6:XqxFQ/x98XTQs7+Ns8GGJw== [fileUNF]
This dataset contains 3 versions of epitope-paratope data and their neutralizing data for the SARS-CoV 2 virus. We pre-processed and annotated antibody-antigen binding data from the Observed Antibody Space (OAS) database to obtain these paratopes and epitopes.
Citation
Feb 3, 2025 - Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction
Plain Text - 281 B - MD5: b6f4c46fb08d07a94449762ae037d9e1
Citation Information
CoV-AbDab_281221_Shaun.xlsx
Feb 3, 2025 - Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction
MS Excel Spreadsheet - 8.9 MB - MD5: 2713a4b215b8c6a8429e44dc0d6f6342
Raw Data
CoV-AbDab_310.tab
Feb 3, 2025 - Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction
Tabular Data - 23.8 KB - 6 Variables, 310 Observations - UNF:6:1S8xNlxC/A5bjyz5wcJXPQ==
the data with PDB identifiers in columns
CoV-AbDab_extract.tab
Feb 3, 2025 - Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction
Tabular Data - 21.3 KB - 5 Variables, 310 Observations - UNF:6:GtERqAvwJ8cPApagJMT+dg==
Pre-processed data
data_preprocessing.py
Feb 3, 2025 - Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction
Python Source Code - 762 B - MD5: 892894b6ebf417b6fd4945ec00db732d
GCN_EpiPred_FinalNov2023.ipynb
Feb 3, 2025 - Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction
Jupyter Notebook - 222.3 KB - MD5: ed2bb96a02e866f3a3210f35e8e16cfa
README.md
Feb 3, 2025 - Related Data for: PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction
Markdown Text - 1.2 KB - MD5: 75cc3591864d6e42ae9dbbf4daf859cd
Documentation
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