Excel file with DASEs for Lorenzini et al (Roca) RNA 2019 (doi:10.21979/N9/3RYIVP)

View:

Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Entire Codebook

Document Description

Citation

Title:

Excel file with DASEs for Lorenzini et al (Roca) RNA 2019

Identification Number:

doi:10.21979/N9/3RYIVP

Distributor:

DR-NTU (Data)

Date of Distribution:

2019-05-27

Version:

1

Bibliographic Citation:

Roca Castella, Francesc Xavier, 2019, "Excel file with DASEs for Lorenzini et al (Roca) RNA 2019", https://doi.org/10.21979/N9/3RYIVP, DR-NTU (Data), V1, UNF:6:fIX5Bo5JAZnoC+WXEh4DBQ== [fileUNF]

Study Description

Citation

Title:

Excel file with DASEs for Lorenzini et al (Roca) RNA 2019

Identification Number:

doi:10.21979/N9/3RYIVP

Authoring Entity:

Roca Castella, Francesc Xavier (Nanyang Technological University)

Other identifications and acknowledgements:

Francesc Xavier Roca Castella

Software used in Production:

MS Excel

Grant Number:

MoE Tier 2 MOE2013-T2-1-101 ARC 45/13

Grant Number:

MoE Tier 2 MOE2016-T2-2-104(S)

Distributor:

DR-NTU (Data)

Access Authority:

Roca Castella, Francesc Xavier

Depositor:

Roca Castella, Francesc Xavier

Date of Deposit:

2019-05-09

Holdings Information:

https://doi.org/10.21979/N9/3RYIVP

Study Scope

Keywords:

Medicine, Health and Life Sciences, Medicine, Health and Life Sciences, DASEs, Alternative splicing, RNA sequencing data, PRPF40B

Abstract:

7 RNA-seq samples for K562 cells, PRPF40B knockout and rescue with WT or MDS mutant PRPF40B. Excel file with Differential Alternative Splicing Events (DASEs) from RNA-seq data using rMATS.. Only events that pass the cutoffs.

Kind of Data:

DASEs

Methodology and Processing

Sources Statement

Data Access

Other Study Description Materials

File Description--f10027

File: DASE(PRPF40B)_sorted.tab

  • Number of cases: 380

  • No. of variables per record: 22

  • Type of File: text/tab-separated-values

Notes:

UNF:6:fIX5Bo5JAZnoC+WXEh4DBQ==

Variable Description

List of Variables:

Variables

GeneID

f10027 Location:

Variable Format: character

Notes: UNF:6:QK0r0NDOmMuvTSvH7Rh9Ig==

geneSymbol

f10027 Location:

Variable Format: character

Notes: UNF:6:QK0r0NDOmMuvTSvH7Rh9Ig==

chr

f10027 Location:

Variable Format: character

Notes: UNF:6:87odk8zaf/pOG9Dgquq/Mg==

strand

f10027 Location:

Variable Format: character

Notes: UNF:6:IArmsfZFJf9/qPk6+HjLkQ==

longExonStart0base

f10027 Location:

Summary Statistics: Min. 222845.0; Mean 6.81322476526316E7; Max. 2.47171207E8; StDev 5.548555330227732E7; Valid 380.0

Variable Format: numeric

Notes: UNF:6:Q+V7TpyQNeKwsUztlmIS2Q==

longExonEnd

f10027 Location:

Summary Statistics: Max. 2.47171395E8; StDev 5.5485548036513604E7; Mean 6.813247309473686E7; Valid 380.0; Min. 222962.0

Variable Format: numeric

Notes: UNF:6:EMtPVWrAcMmkAoB1dZ5w8Q==

shortES

f10027 Location:

Summary Statistics: Valid 380.0; StDev 5.5485554332197554E7; Mean 6.813229146315789E7; Min. 222845.0; Max. 2.47171259E8

Variable Format: numeric

Notes: UNF:6:IUq6RS9ZmIJMC4lkcwr4cQ==

shortEE

f10027 Location:

Summary Statistics: Max. 2.47171395E8; Min. 222957.0; Valid 380.0; Mean 6.81324137105263E7; StDev 5.5485554062865175E7

Variable Format: numeric

Notes: UNF:6:r2EmnXQ2+wI9ZPHiF3I2Ow==

flankingES

f10027 Location:

Summary Statistics: Max. 2.47163249E8; Mean 6.813283723157895E7; StDev 5.5485004275588036E7; Min. 223123.0; Valid 380.0

Variable Format: numeric

Notes: UNF:6:axuSCZggY8LIKsMbYeQZ0A==

flankingEE

f10027 Location:

Summary Statistics: Min. 223292.0; Mean 6.813315350789472E7; StDev 5.548502598771841E7; Valid 380.0; Max. 2.47163376E8

Variable Format: numeric

Notes: UNF:6:5YyTByxYRDCAtx/06O+Szg==

ID...12

f10027 Location:

Summary Statistics: Min. 5.0; Mean 15578.75789473684; Max. 30998.0; Valid 380.0; StDev 9050.827893694763

Variable Format: numeric

Notes: UNF:6:819Fd1PbOJfyv7yl0ZU+Fg==

ICSAMPLE1

f10027 Location:

Variable Format: character

Notes: UNF:6:A4CMyUX6K5JT6eZ+VJOqaQ==

SCSAMPLE1

f10027 Location:

Variable Format: character

Notes: UNF:6:I11uawdm+Q4yFj+5/GibPQ==

ICSAMPLE2

f10027 Location:

Variable Format: character

Notes: UNF:6:L/Lqj6IqHgHv8xb+6Hk3hQ==

SCSAMPLE2

f10027 Location:

Variable Format: character

Notes: UNF:6:4PKXBjqyl2N83NPe9+tfLg==

IncFormLen

f10027 Location:

Summary Statistics: StDev 36.47006855723423; Max. 200.0; Mean 162.5078947368421; Min. 102.0; Valid 380.0

Variable Format: numeric

Notes: UNF:6:IQUVJXcv5rMYxVdibTBjbQ==

SkipFormLen

f10027 Location:

Summary Statistics: Max. 100.0; Valid 380.0; Mean 100.0; Min. 100.0; StDev 0.0

Variable Format: numeric

Notes: UNF:6:dN3HgLOEhwnNHDqYyCsCeQ==

PValue

f10027 Location:

Summary Statistics: StDev 0.014735059898764228; Mean 0.012541425913979203; Valid 380.0; Min. 0.0; Max. 0.0490139522062;

Variable Format: numeric

Notes: UNF:6:oaocwohFnZg60D1+aJakhQ==

FDR

f10027 Location:

Summary Statistics: Valid 380.0; Max. 0.996367521434; Min. 0.0; StDev 0.33059534127251355; Mean 0.35887471916844355

Variable Format: numeric

Notes: UNF:6:+9hIUdrYmwVOv485QFHAuQ==

IncLevel1

f10027 Location:

Variable Format: character

Notes: UNF:6:+RSE623l6utYR5a2OtsFyQ==

IncLevel2

f10027 Location:

Variable Format: character

Notes: UNF:6:HpCgmv14KDqMZz61BTksTw==

IncLevelDifference

f10027 Location:

Summary Statistics: Mean 0.08337105263157894; Min. -0.69; StDev 0.21622288096357253; Max. 0.664; Valid 380.0;

Variable Format: numeric

Notes: UNF:6:v3H9H+TMOl3iudvV67pMMQ==