Replication Data for: Potential probiotic strains from milk and water kefir grains in Singapore – Use for defense against enteric bacterial pathogens (doi:10.21979/N9/9TG8JH)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
Entire Codebook

Replication Data for: Potential probiotic strains from milk and water kefir grains in Singapore – Use for defense against enteric bacterial pathogens

doi:10.21979/N9/9TG8JH

DR-NTU (Data)

2021-12-08

2

Tan, Li Ling, 2021, "Replication Data for: Potential probiotic strains from milk and water kefir grains in Singapore – Use for defense against enteric bacterial pathogens", https://doi.org/10.21979/N9/9TG8JH, DR-NTU (Data), V2, UNF:6:OTFwUMt5g826OnJI1M94vQ== [fileUNF]

Replication Data for: Potential probiotic strains from milk and water kefir grains in Singapore – Use for defense against enteric bacterial pathogens

doi:10.21979/N9/9TG8JH

Tan, Li Ling (Nanyang Technological University)

Excel

MOE/RCE: M4330019.C70

AcRF-Tier 1 grant RG19/18 & RT08/19 (S)

SFS_RND_SUFP_001_06

SNBC/2021/SF2/P04

DR-NTU (Data)

Tan, Li Ling

Tan, Li Ling

2021-12-08

https://doi.org/10.21979/N9/9TG8JH

Medicine, Health and Life Sciences, Medicine, Health and Life Sciences, Kefir, Probiotics

This dataset contains preliminary data collected for the article: Potential probiotic strains from milk and water kefir grains in Singapore – Use for defense against enteric bacterial pathogens

Experimental data

Genomics data

10.3389/fmicb.2022.857720

Tan, L. L., Tan, C. H., Ng, N. K. J., Tan, Y. H., Conway, P. L. & Loo, J. S. C. (2022). Potential probiotic strains from milk and water kefir grains in Singapore—use for defense against enteric bacterial pathogens. Frontiers in Microbiology, 13, 857720-.

10356/153393

Tan, L. L., Tan, C. H., Ng, N. K. J., Tan, Y. H., Conway, P. L. & Loo, J. S. C. (2022). Potential probiotic strains from milk and water kefir grains in Singapore—use for defense against enteric bacterial pathogens. Frontiers in Microbiology, 13, 857720-.

• Number of cases: 16

• No. of variables per record: 7

• Type of File: text/tab-separated-values

UNF:6:y5sFPAmW5WGCOPkl1OXTeQ==

• Number of cases: 17

• No. of variables per record: 10

• Type of File: text/tab-separated-values

UNF:6:r7iL0OcKWJrKmfOYn782SQ==

• Number of cases: 42

• No. of variables per record: 7

• Type of File: text/tab-separated-values

UNF:6:oCq+xejLLxF/5sE1glpqCg==

• Number of cases: 16

• No. of variables per record: 13

• Type of File: text/tab-separated-values

UNF:6:yjZQRtfGtb3KekW2lXncFw==

• Number of cases: 17

• No. of variables per record: 5

• Type of File: text/tab-separated-values

UNF:6:MAvJfDo1/ZWsi7hUYjwVXw==

• Number of cases: 40

• No. of variables per record: 7

• Type of File: text/tab-separated-values

UNF:6:qkFxpBdnVQtOHzCttfa7uQ==

• Number of cases: 39

• No. of variables per record: 8

• Type of File: text/tab-separated-values

UNF:6:8dvzsutTOl2ro/qXElQUaw==

• Number of cases: 21

• No. of variables per record: 6

• Type of File: text/tab-separated-values

UNF:6:OjOktevZ6Z4vnpe4BpIepg==

• Number of cases: 16

• No. of variables per record: 19

• Type of File: text/tab-separated-values

UNF:6:GHhyON3hhJri45T0JqozCw==

• Number of cases: 78

• No. of variables per record: 17

• Type of File: text/tab-separated-values

UNF:6:W6l40c6osBIGu+58bN5Tog==

• Number of cases: 16

• No. of variables per record: 8

• Type of File: text/tab-separated-values

UNF:6:f/9hybDQT3Kh0HTA04t0pg==

• No. - No.
• Kefirisolatespecies - Kefirisolatespecies
• Strain - Strain
• Average%adhesion - Average%adhesion
• Stdev%adhesion - Stdev%adhesion
• Averagebacteria/cell - Averagebacteria/cell
• Stdevbacteria/cell - Stdevbacteria/cell
• No. - No.
• Kefirisolatespecies - Kefirisolatespecies
• Strain - Strain
• ABS517nm(withDPPH)1 - ABS517nm(withDPPH)1
• ABS517nm(withDPPH)2 - ABS517nm(withDPPH)2
• ABS517nm(withoutDPPH) - ABS517nm(withoutDPPH)
• Antioxidantactivity1(AA%) - Antioxidantactivity1(AA%)
• Antioxidantactivity2(AA%) - Antioxidantactivity2(AA%)
• AverageAntioxidantactivity(AA%) - AverageAntioxidantactivity(AA%)
• StdevofAntioxidantactivity(AA%) - StdevofAntioxidantactivity(AA%)
• Organism - Organism
• AreasofInterest(AOIs) - AreasofInterest(AOIs)
• AOI - AOI
• start - start
• end - end
• Class - Class
• Fastaheader - Fastaheader
• A - A
• PGAP-annotatedgenesrelatingto - PGAP-annotatedgenesrelatingto
• C - C
• D - D
• E - E
• F - F
• G - G
• H - H
• I - I
• J - J
• K - K
• L - L
• M - M
• Organism - Organism
• PGAP-annotatedgenesrelatingtobiosynthesisof - PGAP-annotatedgenesrelatingtobiosynthesisof
• C - C
• D - D
• E - E
• No. - No.
• Pathogenstrain - Pathogenstrain
• Probiotictreatment - Probiotictreatment
• Average%adhesion - Average%adhesion
• Stdev%adhesion - Stdev%adhesion
• Normalisedadhesion - Normalisedadhesion
• Normalisedadhesionstdev - Normalisedadhesionstdev
• No. - No.
• Kefirisolatespecies - Kefirisolatespecies
• Strain - Strain
• OD490 - OD490
• AverageOD490 - AverageOD490
• %cytotoxicity - %cytotoxicity
• Average%cytotoxicity - Average%cytotoxicity
• Stdev%cytotoxicity - Stdev%cytotoxicity
• SUBID            - SUBID           
• BioProject      - BioProject     
• BioSample       - BioSample      
• Accession       - Accession      
• Organismspecies - Organismspecies
• Strainname - Strainname
• A - A
• Plasmids - Plasmids
• C - C
• D - D
• E - E
• F - F
• G - G
• H - H
• I - I
• J - J
• K - K
• L - L
• M - M
• N - N
• O - O
• P - P
• Q - Q
• R - R
• S - S
• A - A
• B - B
• Organism - Organism
• D - D
• E - E
• F - F
• G - G
• H - H
• I - I
• J - J
• K - K
• L - L
• M - M
• N - N
• O - O
• P - P
• Q - Q
• A - A
• Virulencemarker - Virulencemarker
• C - C
• D - D
• E - E
• F - F
• G - G
• H - H

f81126 Location:

Summary Statistics: Mean 8.5; Max. 16.0; Valid 16.0; StDev 4.760952285695233; Min. 1.0;

Variable Format: numeric

Notes: UNF:6:2gH76V78fTaMc83KJgglGQ==

f81126 Location:

Variable Format: character

Notes: UNF:6:YoOvInYPhMDBMDdgfTYrpg==

f81126 Location:

Variable Format: character

Notes: UNF:6:YoOHP+/uhx+b3H212EnGeA==

f81126 Location:

Summary Statistics: Mean 0.07924190610318171; StDev 0.060024896114926216; Valid 16.0; Min. 0.00905542544886807; Max. 0.18076923076923077

Variable Format: numeric

Notes: UNF:6:X79jhmIoSrIVNnzwSnHM/A==

f81126 Location:

Summary Statistics: Valid 16.0; Max. 0.10737547418017936; Min. 4.419417382415828E-4; Mean 0.024876207762980194; StDev 0.02959734249143407

Variable Format: numeric

Notes: UNF:6:dS9qfn9qoqeDgquy0riUWQ==

f81126 Location:

Summary Statistics: Min. 0.1528101528101528; Mean 8.076311070497116; Max. 24.346024346024347; Valid 16.0; StDev 8.251552110849142

Variable Format: numeric

Notes: UNF:6:CJemradg5jisk7F+EnESxg==

f81126 Location:

Summary Statistics: StDev 4.02086505907798; Valid 16.0; Max. 15.017548836388732; Min. 0.036628167893630166; Mean 2.6705329497062467;

Variable Format: numeric

Notes: UNF:6:aSQ6JygNy1dp+M3lVSfFvg==

f85487 Location:

Summary Statistics: Min. 1.0; StDev 5.049752469181039; Valid 17.0; Max. 17.0; Mean 9.0

Variable Format: numeric

Notes: UNF:6:LOwNNEWEEzbuUnrwI3CysQ==

f85487 Location:

Variable Format: character

Notes: UNF:6:+lRcAKf/Gj3AtkPJ5Re8/Q==

f85487 Location:

Variable Format: character

Notes: UNF:6:DdDonkQIsMCbQbTTBi+Rsw==

f85487 Location:

Summary Statistics: StDev 0.009848857801796104; Mean 0.106; Max. 0.13; Valid 17.0; Min. 0.095;

Variable Format: numeric

Notes: UNF:6:MA/TXrJSqOi74/9/S9/lsw==

f85487 Location:

Summary Statistics: StDev 0.0120672137239225; Min. 0.093; Mean 0.10664705882352941; Max. 0.13; Valid 17.0

Variable Format: numeric

Notes: UNF:6:SPRhy1l/NErcXDoixUI86g==

f85487 Location:

Summary Statistics: Valid 17.0; StDev 0.007330436147845986; Mean 0.07888235294117647; Min. 0.071; Max. 0.101;

Variable Format: numeric

Notes: UNF:6:5i8Tu3lI1GQRMkSd9fgjqQ==

f85487 Location:

Summary Statistics: StDev 0.2188635067065801; Valid 17.0; Max. 0.7777777777777779; Mean 0.5333333333333334; Min. 0.0

Variable Format: numeric

Notes: UNF:6:irQuKJg/g0KkJ0CJUH3lhg==

f85487 Location:

Summary Statistics: StDev 0.2681603049760556; Max. 0.8222222222222224; Min. 0.0; Mean 0.5189542483660132; Valid 17.0

Variable Format: numeric

Notes: UNF:6:CSEZhhfEHFKGvb7XlWWkqg==

f85487 Location:

Summary Statistics: Mean 0.5261437908496733; Min. 0.0; Valid 17.0; StDev 0.20615307960223245; Max. 0.7777777777777779

Variable Format: numeric

Notes: UNF:6:sjXL0kxmTS2+9POq+COvNQ==

f85487 Location:

Summary Statistics: Valid 17.0; Min. 0.0; Mean 0.1543618724943182; Max. 0.32998316455372223; StDev 0.09801034433274727

Variable Format: numeric

Notes: UNF:6:pCE2yBazwpfwKLgK6KytlA==

f81135 Location:

Variable Format: character

Notes: UNF:6:KsTyxlhC/1bWngtlicO8Sg==

f81135 Location:

Summary Statistics: StDev 1.6242214252050853; Min. 0.0; Mean 1.0666666666666669; Valid 15.0; Max. 5.0;

Variable Format: numeric

Notes: UNF:6:idr/LUE7zexu1S/s0Le/0Q==

f81135 Location:

Variable Format: character

Notes: UNF:6:rrwGwvOaWKNGFqSA9gq0Zg==

f81135 Location:

Variable Format: character

Notes: UNF:6:mnYPRtFzTrcxu5kRNVHLrQ==

f81135 Location:

Variable Format: character

Notes: UNF:6:1AfMSAgCF/SPPYKkdOSJeg==

f81135 Location:

Variable Format: character

Notes: UNF:6:HIG7sshm29ya1wyap5U67w==

f81135 Location:

Variable Format: character

Notes: UNF:6:b6wEzD6z6IzokZnvmHdD8w==

f81128 Location:

Variable Format: character

Notes: UNF:6:h+0qI0PywkdxYRQNjMC/LQ==

f81128 Location:

Variable Format: character

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f81128 Location:

Variable Format: character

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f81128 Location:

Variable Format: character

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f81128 Location:

Variable Format: character

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f81128 Location:

Variable Format: character

Notes: UNF:6:I7IHNlvcUomh7//17c68Lg==

f81128 Location:

Variable Format: character

Notes: UNF:6:Ftft2AFINQvumzU9HdP2iw==

f81128 Location:

Variable Format: character

Notes: UNF:6:F4USYGdiTxMJA6WKTowhhg==

f81128 Location:

Variable Format: character

Notes: UNF:6:6MAh0WtdG3axU2/wdrk3mg==

f81128 Location:

Variable Format: character

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f81128 Location:

Variable Format: character

Notes: UNF:6:FNeL2k7VCkUEnjBajVzMdA==

f81128 Location:

Variable Format: character

Notes: UNF:6:b0BjDZohWpRqwR1WlprtsA==

f81128 Location:

Variable Format: character

Notes: UNF:6:wswVXd9nLDwy5bBcf5+ylg==

f81133 Location:

Variable Format: character

Notes: UNF:6:Jc1deyXSj//TACZ5hUBeBg==

f81133 Location:

Variable Format: character

Notes: UNF:6:9kybcTPdhobVB1g9cc7hzw==

f81133 Location:

Variable Format: character

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f81133 Location:

Variable Format: character

Notes: UNF:6:a8odojXZ4faTNXG0365Lng==

f81133 Location:

Variable Format: character

Notes: UNF:6:bsaRCBMnjpI2Izeni/SK7w==

f85488 Location:

Summary Statistics: Valid 40.0; Max. 40.0; Min. 1.0; StDev 11.69045194450012; Mean 20.5;

Variable Format: numeric

Notes: UNF:6:JLy7D4JpgOpUjxeuArcjvw==

f85488 Location:

Variable Format: character

Notes: UNF:6:464zUyTp1VxAEGhOKBon/Q==

f85488 Location:

Variable Format: character

Notes: UNF:6:Nqe2jxw5ZtZPFSAiqUmEEQ==

f85488 Location:

Summary Statistics: Mean 0.04393101737919738; Valid 40.0; StDev 0.11337832761368227; Max. 0.6571428571428573; Min. 1.9549180327868854E-5

Variable Format: numeric

Notes: UNF:6:GqGXSDdPb5JgSw9VaT7mQA==

f85488 Location:

Summary Statistics: StDev 0.05499227158832962; Min. 0.0; Valid 40.0; Mean 0.01409673750570965; Max. 0.32324881425670765;

Variable Format: numeric

Notes: UNF:6:up+AtUwDjKbrIWi4Pdbn0g==

f85488 Location:

Summary Statistics: Valid 40.0; Min. 0.012452857041201165; StDev 0.47982649890418727; Max. 1.9215901455767075; Mean 0.6567756881732604;

Variable Format: numeric

Notes: UNF:6:yHLvZP9/JnbU+SWwq0kQsA==

f85488 Location:

Summary Statistics: Min. 0.0; Valid 40.0; Max. 0.6481812160876687; Mean 0.11040535875640392; StDev 0.1444935575874616;

Variable Format: numeric

Notes: UNF:6:uydxtI15ODflfiHDJ6DgxQ==

f81131 Location:

Summary Statistics: StDev 5.338539126015656; Valid 18.0; Max. 18.0; Mean 9.5; Min. 1.0

Variable Format: numeric

Notes: UNF:6:ymWpo1f6T+JjoQATBBafMw==

f81131 Location:

Variable Format: character

Notes: UNF:6:pcKeS37u+TkEr3/mCRE7Ag==

f81131 Location:

Variable Format: character

Notes: UNF:6:O5Eo6sTx1y1qlRES9N/e4w==

f81131 Location:

Summary Statistics: Min. 0.07919999957084656; Mean 3.1177910075355797; Valid 39.0; Max. 3.6255500316619873; StDev 1.041224394948643;

Variable Format: numeric

Notes: UNF:6:pR/tRp7FP32cRsnYOVjYcg==

f81131 Location:

Summary Statistics: Valid 18.0; Max. 3.5694500207901; Mean 3.2770296107908643; StDev 0.7987208399996926; Min. 0.08047500066459179

Variable Format: numeric

Notes: UNF:6:EnLAiUAAsXgW1MfFI5dFng==

f81131 Location:

Variable Format: character

Notes: UNF:6:BP+AVp0bMYn6tKORu81DJw==

f81131 Location:

Variable Format: character

Notes: UNF:6:Lj0vkmYKsr9o1DLAXC2GZw==

f81131 Location:

Variable Format: character

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f81130 Location:

Variable Format: character

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f81130 Location:

Variable Format: character

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f81130 Location:

Variable Format: character

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f81130 Location:

Variable Format: character

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f81130 Location:

Variable Format: character

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f81130 Location:

Variable Format: character

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f81137 Location:

Variable Format: character

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f81137 Location:

Variable Format: character

Notes: UNF:6:C4uEmdkIGf5/Pq1KbehlXA==

f81137 Location:

Variable Format: character

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f81137 Location:

Variable Format: character

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f81137 Location:

Variable Format: character

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f81137 Location:

Variable Format: character

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f81137 Location:

Variable Format: character

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f81137 Location:

Variable Format: character

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f81137 Location:

Variable Format: character

Notes: UNF:6:3/RLrkngkSZw7DaSe1Tyrw==

f81137 Location:

Summary Statistics: Min. NaN; Max. NaN; Valid 0.0; Mean NaN; StDev NaN

Variable Format: numeric

Notes: UNF:6:F7B2H4ewgdXPEHV8zInxKw==

f81137 Location:

Variable Format: character

Notes: UNF:6:5ZXDs8i/DrRfEuZy7rZaEg==

f81137 Location:

Variable Format: character

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f81137 Location:

Variable Format: character

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f81137 Location:

Variable Format: character

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f81137 Location:

Variable Format: character

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f81137 Location:

Variable Format: character

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f81137 Location:

Variable Format: character

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f81137 Location:

Variable Format: character

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f81137 Location:

Variable Format: character

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f81127 Location:

Variable Format: character

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f81127 Location:

Variable Format: character

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f81127 Location:

Variable Format: character

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f81127 Location:

Variable Format: character

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f81127 Location:

Variable Format: character

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f81127 Location:

Variable Format: character

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f81127 Location:

Variable Format: character

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f81127 Location:

Variable Format: character

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f81127 Location:

Variable Format: character

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f81127 Location:

Variable Format: character

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f81127 Location:

Variable Format: character

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f81127 Location:

Variable Format: character

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f81127 Location:

Variable Format: character

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f81127 Location:

Variable Format: character

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f81127 Location:

Variable Format: character

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f81127 Location:

Variable Format: character

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f81127 Location:

Variable Format: character

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f81134 Location:

Variable Format: character

Notes: UNF:6:h+0qI0PywkdxYRQNjMC/LQ==

f81134 Location:

Variable Format: character

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f81134 Location:

Variable Format: character

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f81134 Location:

Variable Format: character

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f81134 Location:

Variable Format: character

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f81134 Location:

Variable Format: character

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f81134 Location:

Variable Format: character

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f81134 Location:

Variable Format: character

Notes: UNF:6:JPjBqHv94lRzOnjOA1ToDg==

Label:

Literature for strains in phylogenetic tree.bib

application/octet-stream

Label:

TYGS pairwise comparisons.xlsx

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