Replication Data for: Functional metagenomic analysis of quorum sensing signaling in a nitrifying community (doi:10.21979/N9/6OLO7I)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
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Replication Data for: Functional metagenomic analysis of quorum sensing signaling in a nitrifying community

doi:10.21979/N9/6OLO7I

DR-NTU (Data)

2022-03-24

1

Tan, Chuan Hao; Yeo, Yee Phan; Ismail, Muhammad Hafiz; Ng, Kai Jing Noele; Sujatha, Subramoni; Taj, Shireen; Tay, Qi Xiang Martin; Xie, Chao; Staffan, Kjelleberg; Rice, Scott, 2022, "Replication Data for: Functional metagenomic analysis of quorum sensing signaling in a nitrifying community", https://doi.org/10.21979/N9/6OLO7I, DR-NTU (Data), V1, UNF:6:3Ni8K1ao2snKV1cVJ9SfWA== [fileUNF]

Replication Data for: Functional metagenomic analysis of quorum sensing signaling in a nitrifying community

doi:10.21979/N9/6OLO7I

Tan, Chuan Hao (Nanyang Technological University)

Yeo, Yee Phan (Nanyang Technological University)

Ismail, Muhammad Hafiz (Nanyang Technological University)

Ng, Kai Jing Noele (Nanyang Technological University)

Sujatha, Subramoni (Nanyang Technological University)

Taj, Shireen (Nanyang Technological University)

Tay, Qi Xiang Martin (Nanyang Technological University)

Xie, Chao (Nanyang Technological University)

Staffan, Kjelleberg (Nanyang Technological University)

Rice, Scott (Nanyang Technological University)

Graphpad Prism

under its Research Centre of Excellence Program

DR-NTU (Data)

Yeo Yee Phan

Yeo, Yee Phan

2021-09-14

https://doi.org/10.21979/N9/6OLO7I

Medicine, Health and Life Sciences, Medicine, Health and Life Sciences, Quorum sensing, Sludge metagenome, Nitrospira

<p>Raw data for the manuscript "Functional metagenomic analysis of quorum sensing signaling in a nitrifying community" <p>

luxI/R amino acid sequences for phylogenetic tree construction

luxI/R genes distribution in the Ulu Pandan Sludge Metagenome

GFP expression for the upregulation of Nspboxes after induction with C8-HSL or DMSO control

SDS-PAGE for NspR1 purification

EMSA gel for co-binding of NspR1-RNAP(holo) to Nsp104 DNA probe

10.1038/s41522-021-00250-3

Tan, C. H., Yeo, Y. P., Hafiz, M., Ng, N. K. J., Subramoni, S., Taj, S., . . . Rice, S. A. (2021). Functional metagenomic analysis of quorum sensing signaling in a nitrifying community. npj Biofilms and Microbiomes, 7(1), 79.

10356/153817

Tan, C. H., Yeo, Y. P., Hafiz, M., Ng, N. K. J., Subramoni, S., Taj, S., . . . Rice, S. A. (2021). Functional metagenomic analysis of quorum sensing signaling in a nitrifying community. npj Biofilms and Microbiomes, 7(1), 79.

• Number of cases: 143

• No. of variables per record: 4

• Type of File: text/tab-separated-values

UNF:6:qpN4nMjwwCTc/1mtngNfnA==

• Number of cases: 97

• No. of variables per record: 98

• Type of File: text/tab-separated-values

UNF:6:nLspZEw2JaPrP1b7U9hvlw==

• AHL Species - AHL Species
• AHL Synthase - AHL Synthase
• Percentage  - Percentage
• Signal - Signal
• A - A
• AfabTraI - AfabTraI
• AtumTraI - AtumTraI
• AvitAvsI - AvitAvsI
• AlipAlpI - AlipAlpI
• BjapBjaI - BjapBjaI
• BradBraI - BradBraI
• MtiaMrtI - MtiaMrtI
• RetlRaiI - RetlRaiI
• RlegCinI - RlegCinI
• MlotTraI1 - MlotTraI1
• SmelSinI - SmelSinI
• SfreTraI - SfreTraI
• Rcap00329 - Rcap00329
• RsphCerI - RsphCerI
• RpalRpaI - RpalRpaI
• SmelTraI - SmelTraI
• AcitAacI - AcitAacI
• BambBafI - BambBafI
• BcenCciI - BcenCciI
• BcepCepI - BcepCepI
• BcepBviI - BcepBviI
• BgluTofI - BgluTofI
• BkurBraI - BkurBraI
• BmalBmal3 - BmalBmal3
• BmalBmaI1 - BmalBmaI1
• BmulBmuI - BmulBmuI
• BpseBpsI - BpseBpsI
• BpseBpmI - BpseBpmI
• BstaCepI - BstaCepI
• BthaBtaI - BthaBtaI
• BunaUnaI - BunaUnaI
• BvieCepI - BvieCepI
• NmulNmuI - NmulNmuI
• RsolSolI - RsolSolI
• AferAfeI - AferAfeI
• AhydAhyI2 - AhydAhyI2
• AhydAhyI - AhydAhyI
• AsalAsaI - AsalAsaI
• AfisLuxI - AfisLuxI
• CrodCroI - CrodCroI
• EtarEdwI - EtarEdwI
• PbetEcbI - PbetEcbI
• PcarExpI - PcarExpI
• PcarCarI - PcarCarI
• DchrExpI - DchrExpI
• PsteEsaI - PsteEsaI
• HantHanI - HantHanI
• PaggEagI - PaggEagI
• PanEanI - PanEanI
• PartexpI - PartexpI
• PcarExpI2 - PcarExpI2
• PaerLasI - PaerLasI
• PaerRhlI - PaerRhlI
• PchlPhzI - PchlPhzI
• PchlCsaI - PchlCsaI
• PcorPcoI - PcorPcoI
• PfluPcoI - PfluPcoI
• PputPpuI - PputPpuI
• PsyrPsmI - PsyrPsmI
• PsyrPsyI - PsyrPsyI
• PsyrAhlI - PsyrAhlI
• SliqSwrI - SliqSwrI
• SmarSpnI - SmarSpnI
• SplySplI - SplySplI
• SproSprI - SproSprI
• SerrSmaI - SerrSmaI
• VangVanI - VangVanI
• VfisLuxI1 - VfisLuxI1
• YentYenI - YentYenI
• YpseYtbI - YpseYtbI
• YpseYpsI - YpseYpsI
• YrucYukI - YrucYukI
• NwinNwiI - NwinNwiI
• UbacTswI - UbacTswI
• UbacAubI - UbacAubI
• UbacAusI - UbacAusI
• QS10-1-4 - QS10-1-4
• QS10-2-3 - QS10-2-3
• QS6-1-5 - QS6-1-5
• QS1 - QS1
• US1 - US1
• US3 - US3
• US4 - US4
• US5 - US5
• US6 - US6
• US7 - US7
• US8 - US8
• US9 - US9
• US11 - US11
• US13 - US13
• US14 - US14
• US15 - US15
• US16 - US16
• WP080886260.1 - WP080886260.1
• CUS35775.1 - CUS35775.1
• WP053378364.1 - WP053378364.1
• WP062484320.1 - WP062484320.1

f74590 Location:

Variable Format: character

Notes: UNF:6:qOnU5mVEtlijDfaxjRZdTQ==

f74590 Location:

Variable Format: character

Notes: UNF:6:jbLU9+GOt8Z5lu3tBGOeow==

f74590 Location:

Summary Statistics: StDev 22.24016893216725; Mean 7.692307692251748; Min. 0.0; Valid 143.0; Max. 98.3788053

Variable Format: numeric

Notes: UNF:6:ux+DOFKU0NmP98euI93+Eg==

f74590 Location:

Variable Format: character

Notes: UNF:6:qOnU5mVEtlijDfaxjRZdTQ==

f74566 Location:

Variable Format: character

Notes: UNF:6:vHwfXlbBLE0kyxzLflK9zA==

f74566 Location:

Summary Statistics: StDev 0.8768094303265196; Valid 96.0; Max. 5.05709783356441; Min. 0.358451498479514; Mean 3.4797679365154335;

Variable Format: numeric

Notes: UNF:6:xhTSvXwj5pU3dY5F917V3g==

f74566 Location:

Summary Statistics: StDev 0.8199009648498063; Mean 3.5469273310284715; Min. 0.866247724218827; Valid 95.0; Max. 5.09140126557181

Variable Format: numeric

Notes: UNF:6:mwUEDjHKq5eDjLIYGnAv6w==

f74566 Location:

Summary Statistics: Min. 0.380451446316971; Mean 3.4462310026624627; Max. 4.95172586085639; StDev 0.7607579173542395; Valid 94.0

Variable Format: numeric

Notes: UNF:6:79StwaDEwxsFH/CQ+j0Gyg==

f74566 Location:

Summary Statistics: StDev 0.6225247037175938; Valid 93.0; Mean 3.5989936627084003; Max. 5.01513936541585; Min. 1.84137414166121

Variable Format: numeric

Notes: UNF:6:I/Jy4lnaqJVYoVGaympABg==

f74566 Location:

Summary Statistics: Max. 5.21931412611834; StDev 0.7906085251474099; Mean 3.6749010999853953; Valid 92.0; Min. 1.50889237520276

Variable Format: numeric

Notes: UNF:6:wttjNODov5I5nwAnKwIDgQ==

f74566 Location:

Summary Statistics: Min. 0.736964636422449; StDev 0.8049748537100275; Max. 5.55624396637609; Mean 4.023172114925646; Valid 91.0;

Variable Format: numeric

Notes: UNF:6:aA0NmjlicYN5I2rLzjZ8qA==

f74566 Location:

Summary Statistics: Max. 5.03510887646176; StDev 0.5946228824768641; Mean 3.6689608386250327; Min. 0.0174521509131556; Valid 90.0

Variable Format: numeric

Notes: UNF:6:zfwD28ve/KxgTa27SpIbvg==

f74566 Location:

Summary Statistics: Valid 89.0; StDev 0.44682979466523015; Max. 4.89761556462506; Min. 2.31113365681116; Mean 3.5742366745463263

Variable Format: numeric

Notes: UNF:6:ZNjnz3G0oXOjuv4XCHYMbQ==

f74566 Location:

Summary Statistics: Mean 3.7435355806795396; Min. 2.93785421566562; Valid 88.0; Max. 5.05256102737492; StDev 0.42825823453894746

Variable Format: numeric

Notes: UNF:6:xeL1XwtmlsHo/8YILpL6Iw==

f74566 Location:

Summary Statistics: Min. 0.684377464888576; StDev 0.7770278771044963; Max. 4.7676979542404; Mean 3.2880246939756663; Valid 87.0

Variable Format: numeric

Notes: UNF:6:YP7XbTlzomp3pdwiqnVu4g==

f74566 Location:

Summary Statistics: Max. 5.01782738612383; Mean 3.582410357956212; Min. 1.82153764545454; Valid 86.0; StDev 0.6935214539540681

Variable Format: numeric

Notes: UNF:6:PEYA4XIeFj5KFZhST48RgA==

f74566 Location:

Summary Statistics: Valid 85.0; Max. 5.09579134050471; StDev 0.782858264505419; Mean 3.6427587415721474; Min. 0.299596927546138

Variable Format: numeric

Notes: UNF:6:4De01LJUH3HNfGHe5v9n3w==

f74566 Location:

Summary Statistics: Max. 5.62434446278503; Valid 84.0; Mean 4.327763561731757; Min. 0.459346022803319; StDev 0.6978310999449192;

Variable Format: numeric

Notes: UNF:6:6dprrx0TBFFy1717QpyOmA==

f74566 Location:

Summary Statistics: Valid 83.0; Min. 1.71162134865964; Mean 3.136767450548693; StDev 0.6357211478442304; Max. 4.52786433236794

Variable Format: numeric

Notes: UNF:6:oaxpTJUf3Wgb7KB8DpBVBw==

f74566 Location:

Summary Statistics: Mean 4.122300724333162; Max. 5.5813482160133; Valid 82.0; Min. 2.26785555691905; StDev 0.740108839270643

Variable Format: numeric

Notes: UNF:6:BXOtmkJZmtnk6GeVXKeWgA==

f74566 Location:

Summary Statistics: Max. 5.26178276967032; Min. 1.69634469260369; StDev 0.6840667751594405; Valid 81.0; Mean 3.8649518194825316

Variable Format: numeric

Notes: UNF:6:FGbY59qi1O/+sGXWhVQ/sg==

f74566 Location:

Summary Statistics: Min. 2.44240034310388; Valid 80.0; StDev 0.6046940846325026; Max. 4.87418435631218; Mean 3.528207965820398

Variable Format: numeric

Notes: UNF:6:edBjhzUhb8+D5Yihm5O3yw==

f74566 Location:

Summary Statistics: Min. 0.0563912226216453; Max. 4.84079746015121; StDev 1.2633247886136505; Valid 79.0; Mean 2.9705602502496915;

Variable Format: numeric

Notes: UNF:6:y6kdV1Vt2HhqpE96IRFGAw==

f74566 Location:

Summary Statistics: Valid 78.0; Min. 1.20050738420652; StDev 1.071228189383783; Max. 5.70300480631176; Mean 3.937575835329768;

Variable Format: numeric

Notes: UNF:6:x1DQkTnYnW3j5NRXhmYx8A==

f74566 Location:

Summary Statistics: StDev 1.2330032396625918; Mean 3.0481299946001306; Min. 0.0884015765705038; Max. 4.87280781410007; Valid 77.0;

Variable Format: numeric

Notes: UNF:6:779ATY/CBbKIhW8Vf56yDQ==

f74566 Location:

Summary Statistics: Max. 5.0356754410013; Valid 76.0; Mean 3.303847875854981; StDev 1.0754242807070185; Min. 1.22892448423249;

Variable Format: numeric

Notes: UNF:6:rXCBYSkqUNxhVkE1rACaIw==

f74566 Location:

Summary Statistics: Min. 0.315516456820389; Max. 4.90071319323585; StDev 1.1784288871503505; Mean 3.1397102130254133; Valid 75.0;

Variable Format: numeric

Notes: UNF:6:yysbCKzwHTJYmslRqDrq8g==

f74566 Location:

Summary Statistics: StDev 1.0881486050064941; Max. 5.04635549043105; Mean 3.336655084999659; Min. 0.235211657280892; Valid 74.0

Variable Format: numeric

Notes: UNF:6:qe5bXE/symU3dCST5sjLJg==

f74566 Location:

Summary Statistics: Max. 5.23885441534545; Mean 3.581982712554179; Min. 1.78681044077683; Valid 73.0; StDev 1.0060215875336

Variable Format: numeric

Notes: UNF:6:y5f+5IFxnMzEenhtB0mP5w==

f74566 Location:

Summary Statistics: Min. 0.0625811273940316; Valid 72.0; StDev 1.1483253744873634; Mean 3.1271064955517; Max. 4.82459084763701

Variable Format: numeric

Notes: UNF:6:LhhyjBP+zekJ4QAbMAqGsA==

f74566 Location:

Summary Statistics: Mean 3.2630030675441604; Max. 4.9241372477997; Valid 71.0; Min. 0.264954945825843; StDev 1.1140329293496951

Variable Format: numeric

Notes: UNF:6:OhDycP7wICbWIAgXRxXHFA==

f74566 Location:

Summary Statistics: Min. 0.374369518369479; Max. 4.83585924008087; StDev 1.0539111481975634; Valid 70.0; Mean 3.22028098174804

Variable Format: numeric

Notes: UNF:6:hCdAT7SQT1mMEvapNPKk0Q==

f74566 Location:

Summary Statistics: Max. 5.04747375456124; Min. 0.0618009795598929; Valid 69.0; StDev 1.0350030710298577; Mean 3.460315398028844

Variable Format: numeric

Notes: UNF:6:/Wn2YUw/47o+xWikTN8Y+g==

f74566 Location:

Summary Statistics: StDev 0.9983505686114412; Mean 3.2955314572206906; Min. 0.0970485267063286; Valid 68.0; Max. 4.84701099462765;

Variable Format: numeric

Notes: UNF:6:FXcUjsQp42LgTCxzmk1uZQ==

f74566 Location:

Summary Statistics: Min. 1.06128136620137; Max. 5.07016844852973; Valid 67.0; Mean 3.5643033652500518; StDev 0.9265135001250931;

Variable Format: numeric

Notes: UNF:6:t9ewqruafzo075jteEsZYw==

f74566 Location:

Summary Statistics: Min. 1.02746457265444; Valid 66.0; Max. 5.04618722021528; StDev 1.0368899052024079; Mean 3.4773206827573;

Variable Format: numeric

Notes: UNF:6:aF2IC6YKjMGtmthjkJgHXg==

f74566 Location:

Summary Statistics: Mean 3.370256604817313; Valid 65.0; Min. 0.534971988091566; Max. 4.82903307268982; StDev 0.8978619047402726

Variable Format: numeric

Notes: UNF:6:zlhjCjgydsubiUbVgGfUHg==

f74566 Location:

Summary Statistics: Min. 1.44091518215613; Max. 4.7070783875435; Valid 64.0; StDev 0.9326896149117413; Mean 3.2255640984416503

Variable Format: numeric

Notes: UNF:6:CmjAeRcCHwkphyKeEE4wOg==

f74566 Location:

Summary Statistics: Valid 63.0; Min. 1.22510893022692; StDev 0.8163174061232416; Mean 3.3689544547798524; Max. 4.76053002021632

Variable Format: numeric

Notes: UNF:6:/jf67C/Brsjs6FQhN7ZNMQ==

f74566 Location:

Summary Statistics: StDev 0.775072612298317; Mean 3.5898857388186287; Valid 62.0; Max. 4.94688315063327; Min. 2.12148552635141;

Variable Format: numeric

Notes: UNF:6:B16siBT0vy5YVT3Z/tHPnw==

f74566 Location:

Summary Statistics: Max. 5.43513486115459; Min. 0.0256937526904691; Mean 3.909098224049816; StDev 1.1668373982004778; Valid 61.0;

Variable Format: numeric

Notes: UNF:6:ApxNq4PGdvPInEwZ7HDJtA==

f74566 Location:

Summary Statistics: StDev 1.062083288229431; Max. 5.47282458768951; Mean 4.011100118935936; Min. 0.0507343319566152; Valid 60.0;

Variable Format: numeric

Notes: UNF:6:EmerN1cymju4Q9JAxqCy9Q==

f74566 Location:

Summary Statistics: StDev 0.934057681665412; Mean 4.066199739764889; Max. 5.46079936467135; Min. 1.88393346452269; Valid 59.0

Variable Format: numeric

Notes: UNF:6:bXo/QVmdkrseQms0x63vgw==

f74566 Location:

Summary Statistics: Min. 0.12786816581298; Mean 3.78996827365455; Valid 58.0; Max. 5.18712799878091; StDev 1.0135770118582967

Variable Format: numeric

Notes: UNF:6:An/2+a1lXO3poxzSY8hIMw==

f74566 Location:

Summary Statistics: Valid 57.0; StDev 1.6421155748909508; Max. 6.37583485542091; Mean 3.74951912215838; Min. 1.43986588971171

Variable Format: numeric

Notes: UNF:6:F/LAKhlF7rLitkvJI5NAdA==

f74566 Location:

Summary Statistics: Mean 3.4306968593606157; Max. 6.14601859242146; Valid 56.0; StDev 1.8005408455973884; Min. 0.708933473260064

Variable Format: numeric

Notes: UNF:6:j0EUfBVWmAq9fD+zH86thA==

f74566 Location:

Summary Statistics: Valid 55.0; Min. 0.0378306521992842; Max. 5.84136645623089; Mean 3.1565883139608806; StDev 1.8094977769906695

Variable Format: numeric

Notes: UNF:6:KisI8g2a4IVhLsKl3A5wJQ==

f74566 Location:

Summary Statistics: Mean 3.3005415211915006; Valid 54.0; StDev 1.7841119708931583; Min. 0.0216837181407798; Max. 5.93299101115386;

Variable Format: numeric

Notes: UNF:6:bPYJRZfzsPP5si6ll+dVdg==

f74566 Location:

Summary Statistics: StDev 1.7454695095439563; Max. 5.8430275124095; Valid 53.0; Min. 0.0150142275799706; Mean 3.270488112315459

Variable Format: numeric

Notes: UNF:6:gr2bsUv5W/yzx32p0ciTmA==

f74566 Location:

Summary Statistics: StDev 1.699137899594352; Mean 3.4727481527679647; Min. 0.544426577092758; Valid 52.0; Max. 5.98151169625415

Variable Format: numeric

Notes: UNF:6:3gkXw7GQCLTZsYv9EEjo7A==

f74566 Location:

Summary Statistics: Mean 3.70013344954155; Valid 51.0; Max. 6.28084294336435; StDev 1.8681351605705314; Min. 0.0741023374952839;

Variable Format: numeric

Notes: UNF:6:j8fTUHyZJbvMCJRdtKSIzA==

f74566 Location:

Summary Statistics: Mean 4.2215610166642605; Valid 50.0; Max. 5.74212568132568; Min. 1.5856316496794; StDev 0.6156784282965426

Variable Format: numeric

Notes: UNF:6:sNm+f0f773rHYxbkTZAUSA==

f74566 Location:

Summary Statistics: Mean 3.534673403977366; Valid 49.0; Max. 6.01284351183058; StDev 1.7641626127593604; Min. 0.294689428984577

Variable Format: numeric

Notes: UNF:6:CyocNO4ekqj1kFFEr88MLQ==

f74566 Location:

Summary Statistics: Valid 48.0; StDev 1.7947590451758961; Max. 6.29368829663899; Min. 0.478782248228762; Mean 3.8386785648747828;

Variable Format: numeric

Notes: UNF:6:7f3Q3EE1tzAuP2pGTyKvYw==

f74566 Location:

Summary Statistics: Valid 47.0; Max. 5.9236526288278; StDev 1.631712129915941; Mean 3.6073185056738404; Min. 0.27988750044662;

Variable Format: numeric

Notes: UNF:6:ThSp5L8czV5YXDxB11dyCA==

f74566 Location:

Summary Statistics: Min. 0.727108074404445; Valid 46.0; Max. 5.83570234590734; Mean 3.5917036793887522; StDev 1.5717067687379311

Variable Format: numeric

Notes: UNF:6:Wv5MISkAby0/JWkTuVQeKg==

f74566 Location:

Summary Statistics: StDev 0.999749325693421; Min. 0.722273295951957; Valid 45.0; Max. 5.11260053158431; Mean 3.550932755287216

Variable Format: numeric

Notes: UNF:6:xsyacTWjYbSBeZmyCIWjTg==

f74566 Location:

Summary Statistics: Max. 5.36361844436445; StDev 0.9089606385609678; Min. 0.962662780302355; Mean 3.8635609825755752; Valid 44.0

Variable Format: numeric

Notes: UNF:6:Ll1lfQrfX124ViNFs2Z0vA==

f74566 Location:

Summary Statistics: Valid 43.0; Min. 1.78236621047627; Max. 5.97896475273135; StDev 0.832299173227494; Mean 4.536418130547181;

Variable Format: numeric

Notes: UNF:6:Rv+eVranGTuM7yJmWBNwDA==

f74566 Location:

Summary Statistics: Max. 5.55103265346067; Min. 2.72563502917881; Valid 42.0; Mean 4.174058696040098; StDev 0.7212612238797742;

Variable Format: numeric

Notes: UNF:6:DkfBpV74eHj1VW8G9BQIoA==

f74566 Location:

Summary Statistics: Min. 2.80487398279897; Max. 5.13925369631104; StDev 0.5062151284619061; Valid 41.0; Mean 3.6669404785375925

Variable Format: numeric

Notes: UNF:6:p4wSzrGL4zA1iRScEoq+oQ==

f74566 Location:

Summary Statistics: Min. 1.111639254516; StDev 0.9505988023614134; Mean 3.906692066123028; Max. 5.37241631739334; Valid 40.0

Variable Format: numeric

Notes: UNF:6:81gznuzQPa0KtxyupusQSA==

f74566 Location:

Summary Statistics: Mean 3.9317298601650195; StDev 0.8464981909429224; Max. 5.32578609062489; Min. 2.05962288523752; Valid 39.0

Variable Format: numeric

Notes: UNF:6:oVj4QoI6rAsqyiCCtOWOPQ==

f74566 Location:

Summary Statistics: Min. 0.267620570789028; Valid 38.0; Mean 3.489087734491491; StDev 1.3480320828041952; Max. 5.59375012847233;

Variable Format: numeric

Notes: UNF:6:GV0enhk5gGKz5FkFOA1xAQ==

f74566 Location:

Summary Statistics: Min. 0.135428451376938; StDev 1.2600165083017425; Valid 37.0; Mean 3.4750548041247975; Max. 5.49501703188063

Variable Format: numeric

Notes: UNF:6:OIzo6QiBIi/Ls29TSYMfCg==

f74566 Location:

Summary Statistics: Mean 3.621924193369003; Valid 36.0; Max. 5.5491190224374; StDev 1.1425808507515485; Min. 0.742675358015938

Variable Format: numeric

Notes: UNF:6:Vk+G0sYTGqCDNATqWT4zOA==

f74566 Location:

Summary Statistics: Mean 3.8327689905886833; Min. 0.475899638852197; Valid 35.0; StDev 1.6239719330363203; Max. 6.03095126055973

Variable Format: numeric

Notes: UNF:6:HkRmbcRe0XLyN9b7DNxgdg==

f74566 Location:

Summary Statistics: Mean 4.398824092707872; Max. 6.64257114407724; Valid 34.0; Min. 0.426452334662379; StDev 1.816676600487945

Variable Format: numeric

Notes: UNF:6:HQDkD8WlU20OTbcQ/9x8rg==

f74566 Location:

Summary Statistics: Valid 33.0; Mean 4.2562153097358495; Max. 6.37958745934626; Min. 0.194105704265379; StDev 1.7015842479404688

Variable Format: numeric

Notes: UNF:6:2VWyy2/F8bKnYUYFmyd2WQ==

f74566 Location:

Summary Statistics: Min. 0.6394488710411; StDev 1.562009294224264; Max. 6.33386530595345; Mean 4.33743408151399; Valid 32.0;

Variable Format: numeric

Notes: UNF:6:NLTdjYINGWE7utbBaiu06Q==

f74566 Location:

Summary Statistics: StDev 1.3923901298587515; Mean 4.162799071195651; Valid 31.0; Min. 0.954244721463641; Max. 6.02455663967659;

Variable Format: numeric

Notes: UNF:6:MQe2eN5iOdc/Vc2PgjgxLg==

f74566 Location:

Summary Statistics: StDev 0.8772204521923342; Min. 1.01786792955226; Mean 3.5014093500638386; Max. 4.86744406387183; Valid 30.0

Variable Format: numeric

Notes: UNF:6:CIFjNoZ2bqHSZFCEDNQYPw==

f74566 Location:

Summary Statistics: StDev 0.7543987446748904; Mean 3.7150307024403197; Max. 4.99542605692033; Min. 1.94161223031984; Valid 29.0;

Variable Format: numeric

Notes: UNF:6:xK333uyRvtFf7ortxOZ8yg==

f74566 Location:

Summary Statistics: Max. 5.6753500370019; Mean 3.907108611145606; Min. 0.179799225033037; StDev 1.3194430833638284; Valid 28.0;

Variable Format: numeric

Notes: UNF:6:Sib2hCtVErJl8/Oi0X/6qw==

f74566 Location:

Summary Statistics: StDev 1.2615573573604217; Max. 5.93731045303593; Valid 27.0; Min. 0.321920367340863; Mean 4.259090746639643

Variable Format: numeric

Notes: UNF:6:cqo9XWrcm732f2BA/aOrmg==

f74566 Location:

Summary Statistics: Mean 4.123640373807383; StDev 0.9635360114345498; Valid 26.0; Max. 5.63819260438244; Min. 1.02040763072637;

Variable Format: numeric

Notes: UNF:6:dzV56RNO/N7+4wf52wpNPw==

f74566 Location:

Summary Statistics: StDev 0.7414733513204385; Mean 4.565953675583762; Min. 1.87225259842351; Valid 25.0; Max. 5.95637659643558

Variable Format: numeric

Notes: UNF:6:tu5TOtOGckKfYSz2soWwCA==

f74566 Location:

Summary Statistics: StDev 0.9035441979401104; Max. 4.91285145786242; Min. 1.48678231585779; Mean 3.297806573042336; Valid 24.0;

Variable Format: numeric

Notes: UNF:6:6mZwutoaEuwcvpeIeT0Auw==

f74566 Location:

Summary Statistics: Mean 3.936889343169959; Valid 23.0; Min. 1.08389265611666; StDev 0.8497157654836692; Max. 5.41878799374348;

Variable Format: numeric

Notes: UNF:6:FyO1PAYrv5IPVsx8MmF6ig==

f74566 Location:

Summary Statistics: Mean 3.269656085945766; Max. 4.6122621524318; StDev 1.2180808181188312; Valid 22.0; Min. 1.02822963249755;

Variable Format: numeric

Notes: UNF:6:Js3UPH2TYxLU91m0Fx/GpA==

f74566 Location:

Summary Statistics: Max. 4.5553453285615; StDev 0.8778358285447666; Mean 3.1660132516609973; Valid 21.0; Min. 0.911220118620942;

Variable Format: numeric

Notes: UNF:6:VEiskIO67PaQ9KUuhR5LJA==

f74566 Location:

Summary Statistics: Max. 4.64470250797608; StDev 0.8095425975529027; Min. 0.638801747974807; Mean 3.3441101892803533; Valid 20.0;

Variable Format: numeric

Notes: UNF:6:TFc0c4u6wGXb0d6nycLCgw==

f74566 Location:

Summary Statistics: StDev 1.091894126388806; Valid 19.0; Min. 1.29928453080124; Mean 3.315326489072492; Max. 4.96380864729555

Variable Format: numeric

Notes: UNF:6:KuwVTLzIPFqlQxFU1eIACA==

f74566 Location:

Summary Statistics: Min. 2.58460488543673; StDev 0.522187186054147; Valid 18.0; Max. 4.52648008909235; Mean 3.3864001545106115;

Variable Format: numeric

Notes: UNF:6:m9Coyv1uyp/opU6iwWNucA==

f74566 Location:

Summary Statistics: Max. 5.41779925192547; Min. 3.494017721717; Mean 4.251541590816342; StDev 0.5168150532620946; Valid 17.0

Variable Format: numeric

Notes: UNF:6:tvn73g96Xy3wBqNMNpCIDQ==

f74566 Location:

Summary Statistics: Valid 16.0; Min. 2.96339108390894; Max. 5.56700202462805; Mean 4.297051052308599; StDev 0.6397047515374386;

Variable Format: numeric

Notes: UNF:6:vt3dz2QxDwHPF7on/mp9dw==

f74566 Location:

Summary Statistics: Valid 15.0; StDev 1.2507913117770435; Min. 0.54131318384542; Max. 4.76521505269283; Mean 3.09134529521275

Variable Format: numeric

Notes: UNF:6:2TBEUJ3+9NLEreqRlItjkg==

f74566 Location:

Summary Statistics: Valid 14.0; Mean 3.4167267720140058; StDev 0.6979207969627647; Min. 2.48536457859948; Max. 4.67844838655378

Variable Format: numeric

Notes: UNF:6:yGSkD3I1Tlb6WQxiAfqhUw==

f74566 Location:

Summary Statistics: StDev 0.9243428384352992; Max. 4.70221544939259; Min. 0.955145256785221; Valid 13.0; Mean 3.445633551192334

Variable Format: numeric

Notes: UNF:6:kZONun7CfJTkU/YB1DbE4Q==

f74566 Location:

Summary Statistics: Valid 12.0; StDev 0.9684504447359569; Min. 2.28610094112981; Max. 5.24367312572018; Mean 3.8813131660577818

Variable Format: numeric

Notes: UNF:6:elTZMjBnk4jeS25bbJakEQ==

f74566 Location:

Summary Statistics: Min. 2.73056820005243; Valid 11.0; Mean 4.151482789583006; StDev 0.868378967451352; Max. 5.36882345607014

Variable Format: numeric

Notes: UNF:6:6dyC+c0Z+sOqUmV6+20fgg==

f74566 Location:

Summary Statistics: Max. 4.75912905886358; Mean 3.527763268166774; Valid 10.0; Min. 0.708234330015348; StDev 1.15132348065173;

Variable Format: numeric

Notes: UNF:6:P7nQjrBqGFsXG2FZqjOirQ==

f74566 Location:

Summary Statistics: Max. 4.50644023508189; Min. 2.71457160970605; StDev 0.526409215594399; Valid 9.0; Mean 3.6329349022439654;

Variable Format: numeric

Notes: UNF:6:ruO4TL4GZoqvpSiqmiOznA==

f74566 Location:

Summary Statistics: Max. 4.96416170539435; StDev 0.4410575710067491; Valid 8.0; Mean 4.198388498156915; Min. 3.34469555473096

Variable Format: numeric

Notes: UNF:6:TjH80bi+Y1vt7mTliemsmQ==

f74566 Location:

Summary Statistics: Min. 1.43720186619205; Mean 2.7159683282938927; Valid 7.0; StDev 1.4830595420300847; Max. 4.81916302439581;

Variable Format: numeric

Notes: UNF:6:p53+zls3bevk3KxsxMS8yw==

f74566 Location:

Summary Statistics: Min. 4.14030652663275; Valid 6.0; StDev 0.4887541725666344; Mean 4.926501688600828; Max. 5.66287287426276

Variable Format: numeric

Notes: UNF:6:JCL1eqY5wH+A8+yk5Ecl3g==

f74566 Location:

Summary Statistics: StDev 0.3364074191973388; Max. 4.90765541766034; Mean 4.328523264392026; Valid 5.0; Min. 4.07169363221663;

Variable Format: numeric

Notes: UNF:6:b00fmB/UqI4X4jG3Dae1fQ==

f74566 Location:

Summary Statistics: StDev 0.10557342323009634; Mean 4.05147052394811; Max. 4.19427518619108; Min. 3.93942393008979; Valid 4.0

Variable Format: numeric

Notes: UNF:6:J4ETDq/CSyVFlaA/tQqKJw==

f74566 Location:

Summary Statistics: Valid 3.0; Min. 0.485031210229459; StDev 0.34274379792240106; Mean 0.757906970632784; Max. 1.14259356795601;

Variable Format: numeric

Notes: UNF:6:ldcxFS/w7YxElEhzIRY/8A==

f74566 Location:

Summary Statistics: Valid 2.0; Max. 1.13683111385975; StDev 0.6091924969165776; Mean 0.706066968242073; Min. 0.275302822624396;

Variable Format: numeric

Notes: UNF:6:0A5U4VQcIVN9TrwEsUULsg==

f74566 Location:

Summary Statistics: Max. 1.29789603734318; Mean 1.29789603734318; Valid 1.0; StDev 0.0; Min. 1.29789603734318;

Variable Format: numeric

Notes: UNF:6:wzZi8EZMNX0KBVYuL22Flg==

f74566 Location:

Summary Statistics: StDev NaN; Valid 0.0; Max. NaN; Mean NaN; Min. NaN;

Variable Format: numeric

Notes: UNF:6:C+occpn6rI6wwLjE70aSVw==

Label:

20150423 12 synthases JB525.pzf

application/octet-stream

Label:

EMSA_Nsp104.NspR1.RNAPholo.pdf

application/pdf

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GFP reporter assay.pzfx

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HPLC_us11.png

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Label:

HPLC_us13.png

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HPLC_us14.png

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HPLC_us15.png

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HPLC_us1.png

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HPLC_us3.png

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HPLC_us4.png

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HPLC_us5.png

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HPLC_us6.png

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HPLC_us7.png

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HPLC_us8.png

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HPLC_us9.png

image/png

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luxIR genes distribution.pzfx

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phylotree_LuxI.fasta

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phylotree_LuxR.fasta

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receptor_LuxR_MLtreebootstrap_AnalysisSummary

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receptor_LuxR_MLtreebootstrap.mtsx

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receptor_LuxR_MLtreebootstrap_partitionlist

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receptor_LuxR_MLtreebootstrap.pdf

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receptor_LuxR_MLtreeoriginal.mtsx

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receptor_LuxR_MLtreeoriginal_pairwise.xlsx

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receptor_LuxR_MLtreeoriginal.pdf

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receptor_LuxR_NJtreebootstrap-1.nwk

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receptor_LuxR_NJtreebootstrap_AnalysisSummary

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receptor_LuxR_NJtreebootstrap_partitionlist

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receptor_LuxR_NJtreebootstrap.pdf

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receptor_LuxR_NJtreeoriginal.mtsx

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receptor_LuxR_NJtreeoriginal_pairwise.xlsx

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receptor_LuxR_NJtreeoriginal.pdf

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SDS-PAGE_NspR1purification.pdf

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synthase_LuxI_MLtreebootstrap_AnalysisSummary.txt

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synthase_LuxI_MLtreebootstrap_noradial.nwk

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synthase_LuxI_MLtreebootstrap_partitionlist.txt

text/plain

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synthase_LuxI_MLtreebootstrapped.mtsx

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synthase_LuxI_MLtreebootstrapped.pdf

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synthase_LuxI_MLtreeoriginal.mtsx

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synthase_LuxI_MLtreeoriginal.nwk

application/octet-stream

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synthase_LuxI_MLtreeoriginal.pdf

application/pdf

Label:

synthase_LuxI_NJtreebootstrap_AnalysisSummary.txt

text/plain

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synthase_LuxI_NJtreebootstrap.mtsx

application/octet-stream

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synthase_LuxI_NJtreebootstrap.nwk

application/octet-stream

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synthase_LuxI_NJtreebootstrap_partitionlist.txt

text/plain

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synthase_LuxI_NJtreebootstrap.pdf

application/pdf

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synthase_LuxI_NJtreeoriginal.mtsx

application/octet-stream

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synthase_LuxI_NJtreeoriginal.nwk

application/octet-stream

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synthase_LuxI_NJtreeoriginal_pairwise.xls

application/vnd.ms-excel

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synthase_LuxI_NJtreeoriginal.pdf

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