Related Data for: Site-specific peroxidation modulates lipid bilayer mechanics (doi:10.21979/N9/MQRTTP)

View:

Part 1: Document Description
Part 2: Study Description
Part 5: Other Study-Related Materials
Entire Codebook

Related Data for: Site-specific peroxidation modulates lipid bilayer mechanics

doi:10.21979/N9/MQRTTP

DR-NTU (Data)

2021-09-27

1

Huang, Changjin; Hsia, K Jimmy; Chng, Choon Peng; Sadovsky, Yoel, 2021, "Related Data for: Site-specific peroxidation modulates lipid bilayer mechanics", https://doi.org/10.21979/N9/MQRTTP, DR-NTU (Data), V1

Related Data for: Site-specific peroxidation modulates lipid bilayer mechanics

doi:10.21979/N9/MQRTTP

Huang, Changjin (Nanyang Technological University)

Hsia, K Jimmy (Nanyang Technological University)

Chng, Choon Peng (Nanyang Technological University)

Sadovsky, Yoel (Magee-Womens Research Institute)

GROMACS

Grace/Xmgrace

R01HD086325

start-up M4082428.050

start-up M4082352.050

Academic Research Fund Tier 1 M4012229.050

DR-NTU (Data)

Huang, Changjin

Chng, Choon Peng

2021-08-25

https://doi.org/10.21979/N9/MQRTTP

Engineering, Medicine, Health and Life Sciences, Engineering, Medicine, Health and Life Sciences, Lipid bilayer membrane, Lipid peroxidation, Molecular dynamics simulation, Ferroptosis

<p> Final research data for paper "Site-specific peroxidation modulates lipid bilayer mechanics" </p>

Data for figures in paper as XMGrace files.

10.1016/j.eml.2020.101148

Chng, C. P., Sadovsky, Y., Hsia, K. J., & Huang, C. (2021). Site-specific peroxidation modulates lipid bilayer mechanics. Extreme Mechanics Letters, 42, 101148.

10356/153450

Chng, C., Sadovsky, Y., Hsia, K. J. & Huang, C. (2021). Site-specific peroxidation modulates lipid bilayer mechanics. Extreme Mechanics Letters, 42, 101148-.

Label:

Plot_area_frac_oxidation_SAPC_w_errors.xvg

Text:

XMGrace file containing data for area/lipid vs fraction of oxidized lipids for SAPC bilayer membrane. Figure S3(a) in SI of paper.

application/octet-stream

Label:

Plot_area_frac_oxidation_SAPE_w_errors.xvg

Text:

XMGrace file containing data for area/lipid vs fraction of oxidized lipids for SAPE bilayer membrane. Figure 4(a) in paper.

application/octet-stream

Label:

Plot_avP2_frac_oxidation_SAPC.xvg

Text:

XMGrace file containing data for order parameter P2 averaged over bonds along both lipid tails as a function of the fraction of oxidized lipids in bilayer membranes without (Native) and with oxidation at various sites for all lipids. Figure S2(c) in SI of paper.

application/octet-stream

Label:

Plot_avP2_frac_oxidation_SAPE.xvg

Text:

XMGrace file containing data for order parameter P2 averaged over bonds along both lipid tails as a function of the fraction of oxidized lipids in bilayer membranes without (Native) and with oxidation at various sites for all lipids. Figure 3(c) in paper.

application/octet-stream

Label:

Plot_KA_vs_fractOxidized_PC_v2_w_errors.xvg

Text:

XMGrace file for elastic modulus vs fraction of oxidized lipids in the membrane for SAPC membrane without and with peroxidation at various lipid sites. Figure S4(b) in SI of paper.

application/octet-stream

Label:

Plot_KA_vs_fractOxidized_PE_v2_w_errors.xvg

Text:

XMGrace file for elastic modulus vs fraction of oxidized lipids in the membrane for SAPE membrane without and with peroxidation at various lipid sites. Figure 5(b) in paper.

application/octet-stream

Label:

Plot_mem_thickness_frac_oxidation_SAPC_w_errors.xvg

Text:

XMGrace file containing data for membrane thickness vs fraction of oxidized lipids for SAPC bilayer membrane. Figure S3(b) in SI of paper.

application/octet-stream

Label:

Plot_mem_thickness_frac_oxidation_SAPE_w_errors.xvg

Text:

XMGrace file containing data for membrane thickness vs fraction of oxidized lipids for SAPE bilayer membrane. Figure 4(b) in paper.

application/octet-stream

Label:

Plot_P2_100pc_saturated_tail_SAPC.xvg

Text:

XMGrace file containing data for order parameter P2 for inter-particle bonds along saturated tail of coarse-grained SAPC lipid for bilayer membranes without (Native) and with oxidation at various sites for all lipids. Figure S2(b) in SI of paper.

application/octet-stream

Label:

Plot_P2_100pc_saturated_tail_SAPE.xvg

Text:

XMGrace file containing data for order parameter P2 for inter-particle bonds along saturated tail of coarse-grained SAPE lipid for bilayer membranes without (Native) and with oxidation at various sites for all lipids. Figure 3(b) in paper.

application/octet-stream

Label:

Plot_P2_100pc_unsaturated_tail_PAPC.xvg

Text:

XMGrace file containing data for order parameter P2 for inter-particle bonds along unsaturated tail of coarse-grained SAPC lipid for bilayer membranes without (Native) and with oxidation at various sites for all lipids. Figure S2(a) in SI of paper.

application/octet-stream

Label:

Plot_P2_100pc_unsaturated_tail_SAPE.xvg

Text:

XMGrace file containing data for order parameter P2 for inter-particle bonds along unsaturated tail of coarse-grained SAPE lipid for bilayer membranes without (Native) and with oxidation at various sites for all lipids. Figure 3(a) in paper.

application/octet-stream

Label:

Tension_vs_Astrain_SAPC_v2.xvg

Text:

XMGrace file containing data for membrane tension vs area strain for SAPC membrane without and with peroxidation at various lipid sites. Figure S4(a) in SI of paper.

application/octet-stream

Label:

Tension_vs_Astrain_SAPE_v2.xvg

Text:

XMGrace file containing data for membrane tension vs area strain for SAPE membrane without and with peroxidation at various lipid sites. Figure 5(a) in paper.

application/octet-stream