Related data for: Insights into the mechanism and regulation of the CbbQO-type Rubisco activase, a MoxR AAA+ ATPase (doi:10.21979/N9/K4IROM)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
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Document Description

Citation

Title:

Related data for: Insights into the mechanism and regulation of the CbbQO-type Rubisco activase, a MoxR AAA+ ATPase

Identification Number:

doi:10.21979/N9/K4IROM

Distributor:

DR-NTU (Data)

Date of Distribution:

2019-12-11

Version:

1

Bibliographic Citation:

Mueller-Cajar, Oliver Martin; Tsai, Yi-Chin Candace; Ye, Fuzhou; Liew, Lynette; Di, Liu; Bhushan, Shashi; Gao, Yong-Gui, 2019, "Related data for: Insights into the mechanism and regulation of the CbbQO-type Rubisco activase, a MoxR AAA+ ATPase", https://doi.org/10.21979/N9/K4IROM, DR-NTU (Data), V1, UNF:6:Jbn6MDwmQifQ9UkD9ghwKw== [fileUNF]

Study Description

Citation

Title:

Related data for: Insights into the mechanism and regulation of the CbbQO-type Rubisco activase, a MoxR AAA+ ATPase

Identification Number:

doi:10.21979/N9/K4IROM

Authoring Entity:

Mueller-Cajar, Oliver Martin (Nanyang Technological University)

Tsai, Yi-Chin Candace (Nanyang Technological University)

Ye, Fuzhou (Nanyang Technological University)

Liew, Lynette (Nanyang Technological University)

Di, Liu (Nanyang Technological University)

Bhushan, Shashi (Nanyang Technological University)

Gao, Yong-Gui (Nanyang Technological University)

Software used in Production:

Microsoft Excel

Software used in Production:

Relion

Grant Number:

startup grant

Grant Number:

Tier 2 grants MOE2016-T2-2-088

Grant Number:

Tier 2 grants MOE2015-T2-1-078

Grant Number:

Tier 2 grants MOE2017-T2-2-089

Distributor:

DR-NTU (Data)

Access Authority:

Mueller-Cajar, Oliver Martin

Depositor:

Mueller-Cajar, Oliver Martin

Date of Deposit:

2019-12-11

Holdings Information:

https://doi.org/10.21979/N9/K4IROM

Study Scope

Keywords:

Agricultural Sciences, Chemistry, Earth and Environmental Sciences, Medicine, Health and Life Sciences, Agricultural Sciences, Chemistry, Earth and Environmental Sciences, Medicine, Health and Life Sciences, Rubisco activase, carbon fixation, AAA+ proteins

Abstract:

This dataset contains the biochemical data collected for this publication. One Excel file is provided for each Figure panel. The electron micrographs used for the 3D-reconstruction shown in Fig. 2 are also provided (*.mrc files).

Kind of Data:

Excel spreadsheets

Kind of Data:

*.mrc format files

Methodology and Processing

Sources Statement

Data Access

Other Study Description Materials

Related Materials

<a href="https://www.pnas.org/content/suppl/2019/12/17/1911123117.DCSupplemental">https://www.pnas.org/content/suppl/2019/12/17/1911123117.DCSupplemental</a>

Related Studies

The atomic coordinates and structure factors have been deposited in the Protein Data Bank, https://www.wwpdb.org/ (PDB ID code <a href="https://www.wwpdb.org/pdb?id=pdb_00006l1q">6L1Q)</a>.

The electron microscopy (EM) density map of AfQ2O2 has been deposited in the Electron Microscopy Data Bank, https://www.ebi.ac.uk/pdbe/emdb/ (accession no. <a href="https://www.ebi.ac.uk/pdbe/entry/emdb/EMD-0789">EMD-0789</a>).

Related Publications

Citation

Identification Number:

10.1073/pnas.1911123117

Bibliographic Citation:

Tsai, C. Y., Ye, F., Liew, L., Liu, D., Bhushan, S., Gao, Y. & Mueller-Cajar, O. (2020). Insights into the mechanism and regulation of the CbbQO-type Rubisco activase, a MoxR AAA+ ATPase. Proceedings of the National Academy of Sciences of the United States of America, 117(1), 381-387.

Citation

Identification Number:

10356/153986

Bibliographic Citation:

Tsai, C. Y., Ye, F., Liew, L., Liu, D., Bhushan, S., Gao, Y. & Mueller-Cajar, O. (2020). Insights into the mechanism and regulation of the CbbQO-type Rubisco activase, a MoxR AAA+ ATPase. Proceedings of the National Academy of Sciences of the United States of America, 117(1), 381-387.

File Description--f18087

File: Tsai Fig3D.tab

  • Number of cases: 121

  • No. of variables per record: 25

  • Type of File: text/tab-separated-values

Notes:

UNF:6:EgYMLBydqYP2WlkleYmeFQ==

File Description--f18099

File: Tsai Fig4D.tab

  • Number of cases: 81

  • No. of variables per record: 21

  • Type of File: text/tab-separated-values

Notes:

UNF:6:yeE8Ge58VBU45Ug1n0gi3Q==

File Description--f18092

File: Tsai FigS5.tab

  • Number of cases: 20

  • No. of variables per record: 17

  • Type of File: text/tab-separated-values

Notes:

UNF:6:EjkibCyBKtW46X+Ay4rHeQ==

Variable Description

List of Variables:

Variables

A

f18087 Location:

Summary Statistics: Min. NaN; Max. NaN; Mean NaN; StDev NaN; Valid 0.0;

Variable Format: numeric

Notes: UNF:6:azQd8GoAcWkdIl2K2kuZfA==

B

f18087 Location:

Variable Format: character

Notes: UNF:6:de1mQDaUUDVcLq6tmsfPLQ==

C

f18087 Location:

Variable Format: character

Notes: UNF:6:+u5LCZV0kfqGzi0OdLYg2w==

D

f18087 Location:

Variable Format: character

Notes: UNF:6:KK2wzcmE1j9Ht9K2Hfqi7A==

E

f18087 Location:

Variable Format: character

Notes: UNF:6:NDvlIxD4Lrvqc7qorQfeGQ==

F

f18087 Location:

Summary Statistics: StDev NaN; Valid 0.0; Max. NaN; Min. NaN; Mean NaN

Variable Format: numeric

Notes: UNF:6:azQd8GoAcWkdIl2K2kuZfA==

16.12.02

f18087 Location:

Summary Statistics: Valid 0.0; StDev NaN; Max. NaN; Mean NaN; Min. NaN;

Variable Format: numeric

Notes: UNF:6:azQd8GoAcWkdIl2K2kuZfA==

H

f18087 Location:

Summary Statistics: StDev 175.36865930566574; Max. 600.0; Mean 300.0; Valid 121.0; Min. 0.0;

Variable Format: numeric

Notes: UNF:6:Mdtwu3AxWeXjR/lH8D6hYA==

1.6uMAfQ2O2-RawData

f18087 Location:

Summary Statistics: StDev 0.048529365420570326; Valid 85.0; Mean 1.0845788235294118; Max. 1.1801; Min. 1.0033

Variable Format: numeric

Notes: UNF:6:OMk7Jq9cbfTC2ukczzboHw==

1.6uMAfQ2O2+3uMAfMER-RawData

f18087 Location:

Summary Statistics: Mean 0.9464950819672131; Valid 61.0; Min. 0.7776; StDev 0.10318749508577336; Max. 1.13;

Variable Format: numeric

Notes: UNF:6:SHw3SgyN2xaIV6jpImPBtA==

1.6uMAfQ2O2+3uMAfMECMC-RawData

f18087 Location:

Summary Statistics: Max. 1.0661; Min. 0.0593; StDev 0.3078529300548973; Mean 0.5730315789473684; Valid 38.0;

Variable Format: numeric

Notes: UNF:6:yz7QwgdiOKH24gFiiztJ/g==

L

f18087 Location:

Summary Statistics: Mean NaN; StDev NaN; Min. NaN; Valid 0.0; Max. NaN

Variable Format: numeric

Notes: UNF:6:azQd8GoAcWkdIl2K2kuZfA==

17.11.09

f18087 Location:

Summary Statistics: Mean NaN; StDev NaN; Max. NaN; Valid 0.0; Min. NaN;

Variable Format: numeric

Notes: UNF:6:azQd8GoAcWkdIl2K2kuZfA==

1.6uMAfQ2O2-RawData

f18087 Location:

Summary Statistics: Mean 0.552672131147541; Valid 61.0; Min. 0.5002; StDev 0.029488829134366238; Max. 0.5972

Variable Format: numeric

Notes: UNF:6:dpoZgmn/F01MWjCp3I3ZEw==

1.6uMAfQ2O2+3uMAfMER-RawData

f18087 Location:

Summary Statistics: StDev 0.11219145828606703; Min. 0.4709; Mean 0.6604712121212121; Max. 0.8326; Valid 66.0

Variable Format: numeric

Notes: UNF:6:7uGKoBhX9tPqWUy2Fb26kQ==

1.6uMAfQ2O2+3uMAfMECMC-RawData

f18087 Location:

Summary Statistics: StDev 0.26382512875193603; Mean 0.5031487804878049; Max. 0.9236; Valid 41.0; Min. 0.1994

Variable Format: numeric

Notes: UNF:6:7G2vYUieqe0nhnHZmng7NQ==

Q

f18087 Location:

Summary Statistics: Mean NaN; Max. NaN; Min. NaN; Valid 0.0; StDev NaN;

Variable Format: numeric

Notes: UNF:6:azQd8GoAcWkdIl2K2kuZfA==

15.09.14

f18087 Location:

Summary Statistics: Mean NaN; Max. NaN; StDev NaN; Min. NaN; Valid 0.0;

Variable Format: numeric

Notes: UNF:6:azQd8GoAcWkdIl2K2kuZfA==

1.6uMAfQ2O2-RawData

f18087 Location:

Summary Statistics: Valid 68.0; Min. 1.0542; StDev 0.03632991143508989; Mean 1.1128691176470589; Max. 1.1811

Variable Format: numeric

Notes: UNF:6:avuXEtWxXzDH1kFIr4w1Dw==

1.6uMAfQ2O2+3uMAfMECMC-RawData

f18087 Location:

Summary Statistics: Min. 0.0537; StDev 0.32391382989402806; Max. 1.0122; Mean 0.4802681818181818; Valid 44.0

Variable Format: numeric

Notes: UNF:6:/NXH37Grf1lA4H5OtecCgA==

U

f18087 Location:

Summary Statistics: Mean NaN; StDev NaN; Min. NaN; Valid 0.0; Max. NaN;

Variable Format: numeric

Notes: UNF:6:azQd8GoAcWkdIl2K2kuZfA==

16.12.05

f18087 Location:

Summary Statistics: Valid 0.0; Max. NaN; StDev NaN; Min. NaN; Mean NaN

Variable Format: numeric

Notes: UNF:6:azQd8GoAcWkdIl2K2kuZfA==

1.6uMAfQ2O2-RawData

f18087 Location:

Summary Statistics: Max. 1.2179; Valid 63.0; Min. 1.0827; StDev 0.03797691418828971; Mean 1.14695873015873

Variable Format: numeric

Notes: UNF:6:20E/5Rp0WW0d8SV6fQi3nA==

1.6uMAfQ2O2+3uMAfMER-RawData

f18087 Location:

Summary Statistics: Max. 1.2669; Mean 1.0747149253731343; Valid 67.0; Min. 0.9071; StDev 0.10163689119923859

Variable Format: numeric

Notes: UNF:6:1qAqoZ5dQYVlTBrNAjCalQ==

1.6uMAfQ2O2+3uMAfMECMC-RawData

f18087 Location:

Summary Statistics: StDev 0.3252300047170525; Mean 0.7043944444444443; Valid 36.0; Max. 1.2182; Min. 0.1556;

Variable Format: numeric

Notes: UNF:6:4CI1Ro5OX76JidWah8zC+Q==

A

f18099 Location:

Summary Statistics: Max. NaN; Valid 0.0; StDev NaN; Min. NaN; Mean NaN;

Variable Format: numeric

Notes: UNF:6:41kyXlV+TPOrCXL/vcsQxQ==

B

f18099 Location:

Variable Format: character

Notes: UNF:6:v+jDtZGDCEGYLYyZbVYq2A==

C

f18099 Location:

Variable Format: character

Notes: UNF:6:ukn6OVFVn6CwYiHQFHbcCw==

D

f18099 Location:

Variable Format: character

Notes: UNF:6:YDN9BWK0UWy0wLsSyKaifw==

E

f18099 Location:

Variable Format: character

Notes: UNF:6:Q0GBxltzn2AXSkVHkMaOVg==

F

f18099 Location:

Summary Statistics: StDev NaN; Max. NaN; Min. NaN; Valid 0.0; Mean NaN

Variable Format: numeric

Notes: UNF:6:41kyXlV+TPOrCXL/vcsQxQ==

17.09.18

f18099 Location:

Summary Statistics: Min. NaN; Mean NaN; Valid 0.0; StDev NaN; Max. NaN;

Variable Format: numeric

Notes: UNF:6:41kyXlV+TPOrCXL/vcsQxQ==

H

f18099 Location:

Summary Statistics: Min. 0.0; StDev 117.63290356018591; Max. 400.0; Mean 200.0; Valid 81.0

Variable Format: numeric

Notes: UNF:6:8RSDsLYKO9H915N+3YsvDg==

1.6uMAfQ2O2-RawData

f18099 Location:

Summary Statistics: StDev 0.03934104232364862; Valid 81.0; Min. 1.218; Max. 1.3531; Mean 1.2854962962962964

Variable Format: numeric

Notes: UNF:6:FyCpsYoswGO+OiBJ4325hg==

1.6uMAfQ2O2+3uMAfMECMC-RawData

f18099 Location:

Summary Statistics: StDev 0.33462739967934724; Min. 0.1287; Valid 45.0; Mean 0.6536444444444445; Max. 1.2022;

Variable Format: numeric

Notes: UNF:6:rzD/YgCTbJhiJ1p5SZnm3A==

1.6uMAfQ2O2+3uMAfMER-RawData

f18099 Location:

Summary Statistics: Valid 81.0; Max. 1.2899; StDev 0.131977794896259; Min. 0.8436; Mean 1.0545876543209876;

Variable Format: numeric

Notes: UNF:6:CfFGv8TQZ22mzckEa4bGbw==

L

f18099 Location:

Summary Statistics: Min. NaN; Max. NaN; Mean NaN; Valid 0.0; StDev NaN;

Variable Format: numeric

Notes: UNF:6:41kyXlV+TPOrCXL/vcsQxQ==

17.09.21

f18099 Location:

Summary Statistics: Min. NaN; StDev NaN; Max. NaN; Mean NaN; Valid 0.0

Variable Format: numeric

Notes: UNF:6:41kyXlV+TPOrCXL/vcsQxQ==

1.6uMAfQ2O2-RawData

f18099 Location:

Summary Statistics: Valid 81.0; Min. 0.8719; StDev 0.04275005699945662; Max. 1.021; Mean 0.9451987654320988

Variable Format: numeric

Notes: UNF:6:owLKThmzcUYKNMtzNGarjQ==

1.6uMAfQ2O2+3uMAfMER-RawData

f18099 Location:

Summary Statistics: Valid 79.0; StDev 0.1271648051019031; Mean 0.7310481012658228; Min. 0.5254; Max. 0.9527

Variable Format: numeric

Notes: UNF:6:Vld4+Z3ongKGOteIUjBQsg==

1.6uMAfQ2O2+3uMAfMECMC-RawData

f18099 Location:

Summary Statistics: Min. 0.1067; StDev 0.26310165091105225; Valid 33.0; Max. 0.926; Mean 0.5165060606060606

Variable Format: numeric

Notes: UNF:6:EVyMxEdx1D6W2kH0HJoNwQ==

Q

f18099 Location:

Summary Statistics: Max. NaN; Min. NaN; Valid 0.0; Mean NaN; StDev NaN

Variable Format: numeric

Notes: UNF:6:41kyXlV+TPOrCXL/vcsQxQ==

17.09.25

f18099 Location:

Summary Statistics: Mean NaN; Valid 0.0; Min. NaN; Max. NaN; StDev NaN

Variable Format: numeric

Notes: UNF:6:41kyXlV+TPOrCXL/vcsQxQ==

1.6uMAfQ2O2-RawData

f18099 Location:

Summary Statistics: Max. 0.8555; Mean 0.7892555555555556; StDev 0.04151665027431765; Valid 81.0; Min. 0.7162

Variable Format: numeric

Notes: UNF:6:p1UM/aT1TiMUh0wU8KTCVQ==

1.6uMAfQ2O2+3uMAfMER-RawData

f18099 Location:

Summary Statistics: Mean 0.9063222222222223; Max. 1.1504; StDev 0.14328067734345756; Valid 81.0; Min. 0.6767;

Variable Format: numeric

Notes: UNF:6:KRMdpZU8kKSp1+3Hkk7sGA==

1.6uMAfQ2O2+3uMAfMECMC-RawData

f18099 Location:

Summary Statistics: Valid 41.0; StDev 0.3090303638092826; Max. 1.203; Mean 0.7237780487804878; Min. 0.2252

Variable Format: numeric

Notes: UNF:6:TVW5HfyVIzU98HBO6J4DRw==

AfQ2O2

f18092 Location:

Variable Format: character

Notes: UNF:6:EBAqTTh5Uv2zQvJLq/Ji0w==

B

f18092 Location:

Summary Statistics: Max. 30.811820739549837; StDev 12.720175819519635; Min. 3.500969E-4; Mean 11.1059352569791; Valid 15.0

Variable Format: numeric

Notes: UNF:6:nq9pHajNxolUreXl/6CS8w==

C

f18092 Location:

Summary Statistics: StDev 17.51602590724823; Valid 15.0; Min. 4.111301E-4; Mean 14.500257639352775; Max. 53.678474276527325

Variable Format: numeric

Notes: UNF:6:tPrV/HSOQQmXhz2T8B0NjQ==

D

f18092 Location:

Summary Statistics: Min. 5.105743E-4; Valid 15.0; Max. 86.81327532154341; StDev 24.654403052665884; Mean 18.769241576868705

Variable Format: numeric

Notes: UNF:6:gF4vG5/pbeols/LzRwnQ+w==

E

f18092 Location:

Summary Statistics: Valid 15.0; StDev 33.72291480588113; Min. 6.674272E-4; Max. 125.38039750803857; Mean 24.97316366627327

Variable Format: numeric

Notes: UNF:6:L2+pI8cYIVhYLHEt0xQVMA==

F

f18092 Location:

Summary Statistics: Min. 9.031137E-4; StDev 49.58613557072672; Valid 15.0; Mean 34.25851375397127; Max. 187.95819935691318;

Variable Format: numeric

Notes: UNF:6:fLeY4XHoiZJ7eLxFTr2Umw==

G

f18092 Location:

Summary Statistics: Valid 15.0; Min. 9.64793E-5; Max. 263.6816720257234; Mean 37.06018493192332; StDev 68.10963124859836

Variable Format: numeric

Notes: UNF:6:6HO+YA+QW2c+8tZeDGb2Dg==

H

f18092 Location:

Summary Statistics: Min. NaN; Valid 0.0; Mean NaN; Max. NaN; StDev NaN;

Variable Format: numeric

Notes: UNF:6:XcwbWHLdn/HCNFAfH+/aAQ==

AfQ2O2

f18092 Location:

Variable Format: character

Notes: UNF:6:gIVSb70SH0HThrgR0PZYgQ==

J

f18092 Location:

Summary Statistics: Max. 25.0; Mean 8.771440338122723; StDev 12.595361955524554; Min. 3.56307E-4; Valid 6.0

Variable Format: numeric

Notes: UNF:6:OIcdDCDryQZ1+i8HZBg5pw==

K

f18092 Location:

Summary Statistics: Max. 30.0; Min. 4.797476E-4; Valid 6.0; StDev 14.979619398083956; Mean 10.754694961787406;

Variable Format: numeric

Notes: UNF:6:uhZKRGNGdbGxrQOyC1ndOQ==

L

f18092 Location:

Summary Statistics: Valid 6.0; Mean 13.038015242889173; StDev 17.248365965725025; Min. 5.602672E-4; Max. 35.0

Variable Format: numeric

Notes: UNF:6:qUnHOX0cVnAQKM8xoAJR6g==

M

f18092 Location:

Summary Statistics: Min. 6.747069E-4; StDev 19.469258478932513; Max. 40.0; Mean 15.993314750056538; Valid 6.0

Variable Format: numeric

Notes: UNF:6:BhbD/xJS6qTma2L2DQEsZw==

N

f18092 Location:

Summary Statistics: Max. 45.0; Mean 20.37773153819357; StDev 22.52528092166345; Valid 6.0; Min. 8.260199E-4

Variable Format: numeric

Notes: UNF:6:Mm2N37466Ou0xbhhCq0fDg==

O

f18092 Location:

Summary Statistics: Valid 6.0; Max. 50.0; Mean 24.771546607974276; Min. 0.0010689787; StDev 26.68387393721436;

Variable Format: numeric

Notes: UNF:6:poExwUMOHiGy0tLvMa71Dw==

P

f18092 Location:

Summary Statistics: Valid 6.0; Max. 89.52855144694534; StDev 38.299036110578506; Min. 0.0012121302; Mean 33.499793377151875

Variable Format: numeric

Notes: UNF:6:HX7yUkZrM8i7FWBzjUB7AQ==

Q

f18092 Location:

Summary Statistics: Min. 0.0014279449; Max. 60.0; Mean 24.043886516738425; StDev 29.128286046305234; Valid 6.0

Variable Format: numeric

Notes: UNF:6:BX/buEgCM7jb9mXxvfP8oQ==

Other Study-Related Materials

Label:

10.mrc

Notes:

application/marc

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Label:

11.mrc

Notes:

application/marc

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12.mrc

Notes:

application/marc

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13.mrc

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application/marc

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14.mrc

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application/marc

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15.mrc

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application/marc

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16.mrc

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application/marc

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17.mrc

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application/marc

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18.mrc

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application/marc

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19.mrc

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application/marc

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1.mrc

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application/marc

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20.mrc

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application/marc

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21.mrc

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application/marc

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22.mrc

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application/marc

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23.mrc

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application/marc

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24.mrc

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application/marc

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25.mrc

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application/marc

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26.mrc

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application/marc

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27.mrc

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application/marc

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28.mrc

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application/marc

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29.mrc

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application/marc

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2.mrc

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application/marc

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30.mrc

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application/marc

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31.mrc

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application/marc

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32.mrc

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application/marc

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33.mrc

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application/marc

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34.mrc

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application/marc

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35.mrc

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application/marc

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36.mrc

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application/marc

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37.mrc

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application/marc

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38.mrc

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application/marc

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39.mrc

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application/marc

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3.mrc

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application/marc

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40.mrc

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application/marc

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41.mrc

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application/marc

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42.mrc

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application/marc

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43.mrc

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application/marc

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44.mrc

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application/marc

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45.mrc

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application/marc

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46.mrc

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application/marc

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47.mrc

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application/marc

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48.mrc

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application/marc

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49.mrc

Notes:

application/marc

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4.mrc

Notes:

application/marc

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5.mrc

Notes:

application/marc

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6.mrc

Notes:

application/marc

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7.mrc

Notes:

application/marc

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8.mrc

Notes:

application/marc

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9.mrc

Notes:

application/marc

Other Study-Related Materials

Label:

Tsai Fig3C.xlsx

Notes:

application/vnd.openxmlformats-officedocument.spreadsheetml.sheet

Other Study-Related Materials

Label:

Tsai Fig4C.xlsx

Notes:

application/vnd.openxmlformats-officedocument.spreadsheetml.sheet

Other Study-Related Materials

Label:

Tsai Fig4F.xlsx

Notes:

application/vnd.openxmlformats-officedocument.spreadsheetml.sheet

Other Study-Related Materials

Label:

Tsai Fig4G.xlsx

Notes:

application/vnd.openxmlformats-officedocument.spreadsheetml.sheet