Replication Data for: Enterococcus faecalis adapts to antimicrobial conjugated oligoelectrolytes by lipid rearrangement and differential expression of membrane stress response genes (doi:10.21979/N9/MNHETI)

View:

Part 1: Document Description
Part 2: Study Description
Part 5: Other Study-Related Materials
Entire Codebook

(external link) (external link)

Document Description

Citation

Title:

Replication Data for: Enterococcus faecalis adapts to antimicrobial conjugated oligoelectrolytes by lipid rearrangement and differential expression of membrane stress response genes

Identification Number:

doi:10.21979/N9/MNHETI

Distributor:

DR-NTU (Data)

Date of Distribution:

2020-01-21

Version:

1

Bibliographic Citation:

Gayatri Shankar Chilambi; Jamie Hinks; Artur Matysik; Xinyi Zhu; Pei Yi Choo; Xianghui Liu; Mary B. Chan-Park; Guillermo C Bazan; Kimberly A. Kline; Scott A. Rice, 2020, "Replication Data for: Enterococcus faecalis adapts to antimicrobial conjugated oligoelectrolytes by lipid rearrangement and differential expression of membrane stress response genes", https://doi.org/10.21979/N9/MNHETI, DR-NTU (Data), V1

Study Description

Citation

Title:

Replication Data for: Enterococcus faecalis adapts to antimicrobial conjugated oligoelectrolytes by lipid rearrangement and differential expression of membrane stress response genes

Identification Number:

doi:10.21979/N9/MNHETI

Authoring Entity:

Gayatri Shankar Chilambi (Nanyang Technological University)

Jamie Hinks (Nanyang Technological University)

Artur Matysik (Nanyang Technological University)

Xinyi Zhu (Nanyang Technological University)

Pei Yi Choo (Nanyang Technological University)

Xianghui Liu (Nanyang Technological University)

Mary B. Chan-Park (Nanyang Technological University)

Guillermo C Bazan (Nanyang Technological University)

Kimberly A. Kline (Nanyang Technological University)

Scott A. Rice (Nanyang Technological University)

Software used in Production:

R

Grant Number:

Tier 3 Grant (MOE2013-T3-1-002)

Grant Number:

Tier 2 Grant (M4360005.C70)

Grant Number:

Grant NMRC/CBRG/0086/2015

Grant Number:

Grant W911NF-09-0001

Distributor:

DR-NTU (Data)

Access Authority:

Scott, Rice

Access Authority:

Shankar Chilambi, Gayatri

Access Authority:

Artur Stanislaw, Matysik

Depositor:

Artur Stanislaw, Matysik

Date of Deposit:

2019-12-03

Holdings Information:

https://doi.org/10.21979/N9/MNHETI

Study Scope

Keywords:

Medicine, Health and Life Sciences, Medicine, Health and Life Sciences, Enterococcus faecalis, conjugated oligolectrolytes, daptomycin resistance, liaFSR, cell membrane stress response

Abstract:

Replication Data for publication: <b>Enterococcus faecalis adapts to antimicrobial conjugated oligoelectrolytes by lipid rearrangement and differential expression of membrane stress response genes.</b><br> <br>Includes: <br><li>RNA sequencing data: RAW reads <br><li>RNA sequencing data: non rRNA reads <br><li>RNA sequencing data: extracted counts <br><br>See <i>RNAseq-readme.txt</i> for file description.

Kind of Data:

RNAseq

Methodology and Processing

Sources Statement

Data Access

Other Study Description Materials

Related Publications

Citation

Identification Number:

10.3389/fmicb.2020.00155

Bibliographic Citation:

Chilambi, G. S., Hinks, J., Matysik, A., Zhu, X., Choo, P. Y., Liu, X., ... & Rice, S. A. (2020). Enterococcus faecalis Adapts to Antimicrobial Conjugated Oligoelectrolytes by Lipid Rearrangement and Differential Expression of Membrane Stress Response Genes. Frontiers in microbiology, 11, 155.

Citation

Identification Number:

10356/145240

Bibliographic Citation:

Chilambi, G. S., Hinks, J., Matysik, A., Zhu, X., Choo, P. Y., Liu, X., . . . Rice, S.A. (2020). Enterococcus faecalis adapts to antimicrobial conjugated oligoelectrolytes by lipid rearrangement and differential expression of membrane stress response genes. Frontiers in Microbiology, 11, 155-.

Other Study-Related Materials

Label:

CC1_S25_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

CC1_S25_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

CC1_S25_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

CC1_S25_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

CC2_S26_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

CC2_S26_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

CC2_S26_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

CC2_S26_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

CC3_S27_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

CC3_S27_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

CC3_S27_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

CC3_S27_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

Cct1_S7_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

Cct1_S7_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

Cct1_S7_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

Cct1_S7_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

Cct2_S8_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

Cct2_S8_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

Cct2_S8_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

Cct2_S8_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

Cct3_S9_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

Cct3_S9_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

Cct3_S9_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

Cct3_S9_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

CD1_S16_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

CD1_S16_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

CD1_S16_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

CD1_S16_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

CD2_S17_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

CD2_S17_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

CD2_S17_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

CD2_S17_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

CD3_S18_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

CD3_S18_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

CD3_S18_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

CD3_S18_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

DC1_S22_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

DC1_S22_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

DC1_S22_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

DC1_S22_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

DC2_S23_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

DC2_S23_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

DC2_S23_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

DC2_S23_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

DC3_S24_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

DC3_S24_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

DC3_S24_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

DC3_S24_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

Dct1_S4_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

Dct1_S4_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

Dct1_S4_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

Dct1_S4_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

Dct2_S5_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

Dct2_S5_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

Dct2_S5_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

Dct2_S5_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

Dct3_S6_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

Dct3_S6_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

Dct3_S6_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

Dct3_S6_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

DD1_S13_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

DD1_S13_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

DD1_S13_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

DD1_S13_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

DD2_S14_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

DD2_S14_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

DD2_S14_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

DD2_S14_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

DD3_S15_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

DD3_S15_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

DD3_S15_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

DD3_S15_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

RNAseq-readme.txt

Notes:

text/plain

Other Study-Related Materials

Label:

WC1_S19_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

WC1_S19_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

WC1_S19_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

WC1_S19_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

WC2_S20_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

WC2_S20_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

WC2_S20_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

WC2_S20_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

WC3_S21_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

WC3_S21_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

WC3_S21_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

WC3_S21_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

Wct1_S1_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

Wct1_S1_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

Wct1_S1_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

Wct1_S1_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

Wct2_S2_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

Wct2_S2_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

Wct2_S2_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

Wct2_S2_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

Wct3_S3_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

Wct3_S3_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

Wct3_S3_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

Wct3_S3_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

WD1_S10_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

WD1_S10_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

WD1_S10_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

WD1_S10_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

WD2_S11_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

WD2_S11_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

WD2_S11_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

WD2_S11_R2_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

WD3_S12_htcount

Notes:

text/plain; charset=US-ASCII

Other Study-Related Materials

Label:

WD3_S12_non_rRNA.fastq

Notes:

application/octet-stream

Other Study-Related Materials

Label:

WD3_S12_R1_001.fastq.gz

Notes:

application/x-gzip

Other Study-Related Materials

Label:

WD3_S12_R2_001.fastq.gz

Notes:

application/x-gzip