Virulence Information for Influenza Virus Infection (VI2VI) in Mice (doi:10.21979/N9/ILQBAB)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
Entire Codebook

Virulence Information for Influenza Virus Infection (VI2VI) in Mice

doi:10.21979/N9/ILQBAB

DR-NTU (Data)

2019-04-15

2

Ivan, Fransiskus Xaverius, 2019, "Virulence Information for Influenza Virus Infection (VI2VI) in Mice", https://doi.org/10.21979/N9/ILQBAB, DR-NTU (Data), V2, UNF:6:tcVfZQlYB60+SEUz7/g4jQ== [fileUNF]

Virulence Information for Influenza Virus Infection (VI2VI) in Mice

doi:10.21979/N9/ILQBAB

Ivan, Fransiskus Xaverius (Nanyang Technological University)

Python

Singapore AcRF Tier-2 grant MOE2014-T2-2-023

RGANS1905

DR-NTU (Data)

Ivan, Fransiskus Xaverius

Ivan, Fransiskus Xaverius

2019-04-15

https://doi.org/10.21979/N9/ILQBAB

Medicine, Health and Life Sciences, Medicine, Health and Life Sciences, influenza A virus, mouse models, virulence, proteins, meta-analysis, rule-based classification, random forest

Datasets for Virulence Information for Influenza Virus Infection (VI2VI) in Mice. Please see VI2VI-creation.docx for further details. The analyses of the datasets was first provided as a bioRxiv preprint (see Related Publication) and it has now been accepted for BMC Supplements during InCoB2019 (https://incob2019.org/).

Survey data

10.1186/s12864-019-6295-8

Ivan, F. X., & Kwoh, C. K. (2019). Rule-based meta-analysis reveals the major role of PB2 in influencing influenza A virus virulence in mice. BMC genomics, 20(9), 973.

10356/146319

Ivan, F. X., & Kwoh, C. K. (2019). Rule-based meta-analysis reveals the major role of PB2 in influencing influenza A virus virulence in mice. BMC Genomics, 20, 973-.

• Number of cases: 84

• No. of variables per record: 11

• Type of File: text/tab-separated-values

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• Number of cases: 145

• No. of variables per record: 11

• Type of File: text/tab-separated-values

UNF:6:NFU6GUKKhdlCJXRr6BXzDQ==

• Number of cases: 2087

• No. of variables per record: 9

• Type of File: text/tab-separated-values

UNF:6:bSUeeZ/3TTCwfuWQ4zMqyg==

• Number of cases: 114

• No. of variables per record: 9

• Type of File: text/tab-separated-values

UNF:6:GXjIYZ2XzOP0MGFfufjelA==

• Number of cases: 112

• No. of variables per record: 9

• Type of File: text/tab-separated-values

UNF:6:gqvKgcptk1lEZuvF5Db8ng==

• A - A
• B - B
• C - C
• D - D
• E - E
• F - F
• G - G
• H - H
• I - I
• J - J
• K - K
• A - A
• B - B
• C - C
• D - D
• E - E
• F - F
• G - G
• H - H
• I - I
• J - J
• K - K
• A - A
• MetadataofIAVnucleotidesequencesbeingcollected - MetadataofIAVnucleotidesequencesbeingcollected
• C - C
• D - D
• E - E
• F - F
• G - G
• H - H
• I - I
• Reference - Reference
• Hoststrain - Hoststrain
• Influenzastrain - Influenzastrain
• LD50pointestimate - LD50pointestimate
• LD50lowerbound - LD50lowerbound
• LD50upperbound - LD50upperbound
• Infectionunit - Infectionunit
• Two-classvirulencelevel - Two-classvirulencelevel
• Three-classvirulencelevel - Three-classvirulencelevel
• Reference - Reference
• Hoststrain - Hoststrain
• Influenzastrain - Influenzastrain
• LD50pointestimate - LD50pointestimate
• LD50lowerbound - LD50lowerbound
• LD50upperbound - LD50upperbound
• Infectionunit - Infectionunit
• Two-classvirulencelevel - Two-classvirulencelevel
• Three-classvirulencelevel - Three-classvirulencelevel

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Label:

analysis-scripts.7z

Text:

Analysis scripts (for rule-based and random forest models, visualization, and some statistics). A small sample test data will be provided on request.

application/x-7z-compressed

Label:

List-of-References-for-influenza-infections.docx

Text:

List of references that provide virulence information of influenza virus infections in mice.

application/vnd.openxmlformats-officedocument.wordprocessingml.document

Label:

preprocessing-scripts.7z

Text:

Preprocessing scripts. A small sample test data will be provided on request.

application/x-7z-compressed

Label:

VI2VI-creation.docx

Text:

Description of methods and steps taken for creating VI2VI datasets.

application/vnd.openxmlformats-officedocument.wordprocessingml.document

Label:

VI2VI-preprocessed.7z

Text:

Initial VI2VI dataset - preprocessed VI2VI-raw datasets (determining the lower or upper bound for MLD50, adding the virulence classes, etc.).

application/x-7z-compressed

Label:

VI2VI-raw.7z

Text:

Raw infection datasets collected from literature.

application/x-7z-compressed