Excel file with DEGs for Lorenzini et al (Roca) RNA 2019 (doi:10.21979/N9/MUULD6)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Entire Codebook

Document Description

Citation

Title:

Excel file with DEGs for Lorenzini et al (Roca) RNA 2019

Identification Number:

doi:10.21979/N9/MUULD6

Distributor:

DR-NTU (Data)

Date of Distribution:

2019-05-27

Version:

1

Bibliographic Citation:

Roca Castella, Francesc Xavier, 2019, "Excel file with DEGs for Lorenzini et al (Roca) RNA 2019", https://doi.org/10.21979/N9/MUULD6, DR-NTU (Data), V1, UNF:6:s7n2Wk81UQPaJyi6yrLKdg== [fileUNF]

Study Description

Citation

Title:

Excel file with DEGs for Lorenzini et al (Roca) RNA 2019

Identification Number:

doi:10.21979/N9/MUULD6

Authoring Entity:

Roca Castella, Francesc Xavier (Nanyang Technological University)

Other identifications and acknowledgements:

Francesc Xavier Roca Castella

Software used in Production:

MS Excel

Grant Number:

MoE Tier 2 MOE2013-T2-1-101 ARC 45/13

Grant Number:

MoE Tier 2 MOE2016-T2-2-104(S)

Distributor:

DR-NTU (Data)

Access Authority:

Roca Castella, Francesc Xavier

Depositor:

Roca Castella, Francesc Xavier

Date of Deposit:

2019-05-09

Holdings Information:

https://doi.org/10.21979/N9/MUULD6

Study Scope

Keywords:

Medicine, Health and Life Sciences, Medicine, Health and Life Sciences, DEGs, Gene expression, RNA sequencing data, PRPF40B

Abstract:

DEGs and other gene expression data from RNA-seq data. 7 RNA-seq samples for K562 cells, PRPF40B knockout and rescue with WT or MDS mutant PRPF40B. Excel file with all the Differentially Expressed Genes (DEGs). Significant DEGs labeled 'Yes', others 'No'.

Kind of Data:

DEGs

Methodology and Processing

Sources Statement

Data Access

Other Study Description Materials

File Description--f10025

File: DEGs(PRPF40B)_sorted.tab

  • Number of cases: 37617

  • No. of variables per record: 14

  • Type of File: text/tab-separated-values

Notes:

UNF:6:s7n2Wk81UQPaJyi6yrLKdg==

Variable Description

List of Variables:

Variables

testid

f10025 Location:

Variable Format: character

Notes: UNF:6:qJCn4Aw0IzKWTrIljAFvow==

geneid

f10025 Location:

Variable Format: character

Notes: UNF:6:qJCn4Aw0IzKWTrIljAFvow==

gene

f10025 Location:

Variable Format: character

Notes: UNF:6:DtNwYN41Oura9Lu0ajiktg==

locus

f10025 Location:

Variable Format: character

Notes: UNF:6:GD4Zi18wLVJQGkw85GAdDQ==

sample1

f10025 Location:

Variable Format: character

Notes: UNF:6:bvRBfn0mbT7cE0M2h2tEeQ==

sample2

f10025 Location:

Variable Format: character

Notes: UNF:6:eBW5BDZlLmBT07t+TelK/A==

status

f10025 Location:

Variable Format: character

Notes: UNF:6:OIn6DBNgJiy4epA179hXyQ==

value1

f10025 Location:

Summary Statistics: Valid 37617.0; Mean 52.69806896861739; Max. 6378.93; StDev 168.3297236939552; Min. 0.00535215;

Variable Format: numeric

Notes: UNF:6:Hiv09eKKPWolgEAtEjr3qg==

value2

f10025 Location:

Summary Statistics: Min. 0.00698418; Mean 44.376800616211554; Valid 37617.0; StDev 128.73839184225113; Max. 4723.76;

Variable Format: numeric

Notes: UNF:6:yV5Eq9dLcgSCnmWTp06/OA==

log2(foldchange)

f10025 Location:

Summary Statistics: StDev 1.4873632213237489; Max. 8.15692; Mean 0.38481074769386187; Valid 37617.0; Min. -7.69682

Variable Format: numeric

Notes: UNF:6:LAbVyA0GcqGYVeFGbG8qug==

teststat

f10025 Location:

Summary Statistics: StDev 1.973822964121039; Mean 0.11829841587580078; Max. 10.7656; Min. -9.21357; Valid 37617.0;

Variable Format: numeric

Notes: UNF:6:xfTQGaBcvOPm4gkQfgdyCQ==

pvalue

f10025 Location:

Summary Statistics: Valid 37617.0; Mean 0.014175913815562111; Max. 0.05; Min. 5.0E-5; StDev 0.015106937475008509

Variable Format: numeric

Notes: UNF:6:SECChFaMeJ8xOUiEq4Acug==

qvalue

f10025 Location:

Summary Statistics: Mean 0.17289023613764962; Max. 0.452855; Valid 37617.0; Min. 0.00307919; StDev 0.14687268424091862

Variable Format: numeric

Notes: UNF:6:IBoy6mGA3YvcH90RJFoV2Q==

significant

f10025 Location:

Variable Format: character

Notes: UNF:6:OUX7ks8gkNndt5yJyC2aaw==